Dmet011561.1
Basic Information
- Insect
- Drosophila mettleri
- Gene Symbol
- -
- Assembly
- GCA_035047625.1
- Location
- JAWNPI010000103.1:8107337-8108911[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-16 2.4e-13 49.5 0.0 2 45 357 400 356 400 0.95 2 3 0.065 95 2.8 0.0 28 37 430 439 429 444 0.90 3 3 5.4e-19 7.8e-16 57.5 0.0 2 42 466 506 465 509 0.94
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGAGTTCTGCTGCATCAACAAAGCAACAATCAGCAATGCGAGGTATTGCTTGTGGCCAAAGATGGCATCAGCGTACGTGCACATCTTTTCGTTCTAAGCACTTGCAGCGACTTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGTCAGGAGGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGTTATCGTTTATTTACATGGGAGAAACTAGCTTAACCTCTGCCATGCTGCCCGAGTTTCTCGGAGCCATTAACTTACTGGGCATCAAGTCAGCCATAAGCTTTGATACCAATCCAACCTCCATGACGACCACTAATGTTATTAGTGGTGCTACGACAGTCGAGGAAGCCAAATCAATTAGCGGCTTGCATATTGCGAATACAGCTCTTATGGAGGAGGAAGAAGATGCTGGAGCTGTAGTTGGTAAATTGGAAGTGGATAATGCCGTACTCACAAATACTCAACAGCAGCATGAGCAGCAAAGCCGAACCCTAGAATTCCTGGATATGTACGGCGACCAGCCAAAAATAACATATTCAATCGAACACATGGACGGCACAACCACCGGAAATCAGTACATTTATACAGAGAATACTGGAACATTTACTATAACACAATCATCTGTAGCCAAGTTGGGAGTGCAAGGCAGCTCAGCTGTGGTCGACTCTGTGGAGACAGCGGAGCTGGGTGACGAGGATGCCGACGCAGAGGTGACAGACGAGCACGAAGAATCCGAATCACAATTAATCGAGGAGGAGTATGTTGGAACGTCTGATCCGTTGATAGAGATGAGCGCAGAGGCAGGTGTTGACATGCATGAAGATGATATGCATGATGGAgacgaggaggaggatgaTGAACTGTTGGATGTGAAACCTCGCAAATCACATCTCGATATGAAAATGTTAAAGAGCAAGGCACGTCAGCGTCCAGCATCATCGAAGGCAATGAAAAAAGCGATGACcaaacagcatcagcaacacgCGGCTTTTAAAAAAGAATGCAAAGAGGACATTAATGAAGCACTTGACCTTGCAGCGGCTGCCGTACTTCACGAAGGTCTCAGCTTGCAAAAGGCTGCCGATCGCTACGACATATCGAAAACTGTGCTTTGGCGGCGTGTGCGTTCCAATCCAGCCTACATGAGAATAAAACGAGAGAAACCTTCGCTCTCGGAAGCATATGAACGCCTAAAGAATGGCGATTCGTTGAAAAGCATAAGCCAGGATCTACATATACCCATGTCGACGCTGCATCGACACAAAGTACGTCTTGCGGCACAGGGTCGTCTGCCAGATTTCGTTTCCTGCCGGCGGCGCGACAGTACGCCAAAGGATGAGTTGCGTGAAAAGCTAGCTAAAGCAGTGCATGCCTGCACCAATGGGGGCATGACACAAAATCACGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCATTTGCAGAGGCGCGCGACAGAGGAGCGCAAAGTCAAGGAAGAACATGAAGAGGAGGATGATGATgttatgaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTTNVISGATTVEEAKSISGLHIANTALMEEEEDAGAVVGKLEVDNAVLTNTQQQHEQQSRTLEFLDMYGDQPKITYSIEHMDGTTTGNQYIYTENTGTFTITQSSVAKLGVQGSSAVVDSVETAELGDEDADAEVTDEHEESESQLIEEEYVGTSDPLIEMSAEAGVDMHEDDMHDGDEEEDDELLDVKPRKSHLDMKMLKSKARQRPASSKAMKKAMTKQHQQHAAFKKECKEDINEALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELREKLAKAVHACTNGGMTQNHAANLFEIPKSTLWRHLQRRATEERKVKEEHEEEDDDVMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00546759; iTF_00568171; iTF_00568360; iTF_00573237; iTF_00573427; iTF_00549654; iTF_00554306; iTF_00545157; iTF_00545350; iTF_00551690; iTF_00479403; iTF_00559596; iTF_00516176; iTF_00551504; iTF_00473170; iTF_00559410; iTF_00516371; iTF_00554486; iTF_00520023; iTF_00544599; iTF_00472984; iTF_00540475; iTF_00544411; iTF_00549468; iTF_00479583; iTF_00519839; iTF_00540288; iTF_00572517; iTF_00572705; iTF_00532486; iTF_00532293; iTF_00502442; iTF_00502629; iTF_00493565; iTF_00599501; iTF_00599694; iTF_00493758; iTF_00586783; iTF_00586596; iTF_00509920; iTF_00509736; iTF_00476543; iTF_00476732;
- 80% Identity
- iTF_00546759;