Dham016702.1
Basic Information
- Insect
- Drosophila hamatofila
- Gene Symbol
- -
- Assembly
- GCA_035045345.1
- Location
- JAWNPA010000052.1:9001489-9003066[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1 9.5e+03 -3.4 0.1 11 22 123 134 123 136 0.83 2 4 1.3e-16 2.4e-13 49.8 0.0 2 45 359 402 358 402 0.95 3 4 0.06 1.1e+02 2.8 0.0 28 37 432 441 431 446 0.90 4 4 2.8e-18 5.2e-15 55.0 0.0 2 42 468 508 467 510 0.96
Sequence Information
- Coding Sequence
- ATGGGACACTCGTCCACAATAATGGATATACAACGCGTTCTGCTACATCAACAAAGCAACAATCAGCAATGCGAAGTAATGCTTGTGGCCAAAGATGGCATCAGCGTACGCGCCCATCTCTTCGTTTTAAGCACTTGCAGCGATTTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGTCAGGAAGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGCTATCGTTTATTTACATGGGGGAAACTAGTTTGACCTCTGCCATGCTGCCCGAGTTTCTCGGAGCCATTAATTTACTGGGCATCAAGTCCGCCATAAGCTTTGATACCAATCCCACATCCATGACGACCTCAAGTGTTATAAGTGGCGCTATGGCTGTCGAAGAAGCCAAATCAATAAGCGGCTTACATATTGCAAATACAGCGCTTATGGAAGAGGAGGAAGAAGAGGATGCGGGCGCTGTTGTCGGCAAACTGGAAGTGGATAATGCCGTACTCACAAACCCTCAACAGCAGCACGAGCAGGAAGGCCGAACCCTAGAATTCCTGGATGTTTACAGCGAACAACCCAAAATCACATATTCAATCGAGCACATGGGCGGCACAACCAGTGGaaatcagtatatatatacagagaatACGGGAACGTTTACCATAACACAATCATCCGTGGGCAAGTTGGGAGTGCAAGGCAGCTCAGCTGTGGTCGACTCTGTGGAGACAGCTGAGCTGGGTGACGAAGATGTCGAGGCTGAGGTAACAGACGAGCACGAAGAATCTGAGTCACAATTAATCGAGGAGGAATATGTTGCATCGGGTGATcctttaattgaaatgagcGCAGAGGCAGATGTTGATATGCACGAGGATGGAATGCATGATGGagacgaggaggaggatgatGAACTGTTGGATGTGAAGCCTCGTAAATCGCAACTCGATatgaaaatcttaaaattcaAGTCACGTCAGCGTCCAGCATCATCGAAAGCAACGAAGAAAGCACTGACcaaacagcatcaacagcacgCAGCACTAAAAAAAGAATGCAAGGAGGATATCAATGATGCCCTCGACCTCGCAGCGGCTGCCGTTCTTCACGAAGGACTCAGCTTGCAGAAAGCTGCTGATCGTTACGACATATCGAAAACCGTGCTATGGCGACGTGTGCGTTCGAATCCAGCCTACATGAGAATAAAACGGGAGAAGCCTTCGCTTTCGGAAGCATATGAACGCTTAAAGAACGGCGATTCGTTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCAACGCTGCATCGGCACAAGGTGCGTCTGGCGGCACAAGGTCGCCTGCCCGACTTCGTTGCTTGCCGGCGGCGTGACAGTACCCCAAAGGATGAGCTGCGTGAGAAGCTAGCAAAGGCACTGCATGCCTGCATCAACGATGGCATGACCCAAAATCATGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAAAGGCGCACGACAGAGGCGGGGCGCAAAGTCAAAGAAGAGCATGAAGAAGAGGAtgatatgaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQQCEVMLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSSVISGAMAVEEAKSISGLHIANTALMEEEEEEDAGAVVGKLEVDNAVLTNPQQQHEQEGRTLEFLDVYSEQPKITYSIEHMGGTTSGNQYIYTENTGTFTITQSSVGKLGVQGSSAVVDSVETAELGDEDVEAEVTDEHEESESQLIEEEYVASGDPLIEMSAEADVDMHEDGMHDGDEEEDDELLDVKPRKSQLDMKILKFKSRQRPASSKATKKALTKQHQQHAALKKECKEDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKALHACINDGMTQNHAANLFEIPKSTLWRHLQRRTTEAGRKVKEEHEEEDDMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00546570;
- 80% Identity
- iTF_00516371;