Dnav009651.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- -
- Assembly
- GCA_001654015.2
- Location
- NW:2742254-2744206[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2 6.6e+03 -3.6 0.1 11 22 129 140 129 140 0.81 2 4 8e-17 1.6e-13 49.6 0.0 2 45 365 408 364 408 0.95 3 4 0.033 68 2.8 0.0 28 37 438 447 437 452 0.90 4 4 1.4e-18 2.9e-15 55.2 0.0 2 42 474 514 473 516 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTACATCAACAAAGCAACAATCAGCAATGCGAAGTTTTGCTTGTGGCCAAAGATGGTATCAGCGTACGCGCCCATCTCTTCGTTTTAAGCACTTGCAGCGATTTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGTCAGGAAGCGACTGTCATTTTGCCGGACATCCGTGGGGAGCTGCTCGAGAATGTGCTatcgtttatttatatgggGGAAACTAGTTTGACCTCTGCCCTGCTACCCGAGTTTCTGGGGGCCATAAATTTACTGGGCATCAAGTCTGCCATAAGCTTTGATACCAATCCAACATCCATGACGACTTCAAGTGTTATAAGTGGCGCTATGGCTGTCGAAGAAGCCAAAACAATAAGCGGTTTACATATTGCAAATACAGCGCTTAtggaggaagaagaagaagaggataCCGGAGCTGTTGTCGGCAAATTGGAAGTGGATAATTCCGTACTCACAAAtcctcaacaacaacacgagcaGGAAGGCCGAACCCTGGAATTCCTAGATGTTTACAGCGAACAGCCCAAAATCACATACTCCATCGAACACATGGGCGGCACAACCAGTGGaaatcagtatatatatacagagaacACGGGAACGTATACCATTACACAGTCATCCGTGGGCAAGTTGGGAGTGCAAGGTAGCTCAGCTGTGGTCGACTCAGTGGAGACAGCTGAGCTAGGGGACGAGGATGTCGAGGCTGAGGTCACAGACGAGCACGAAGAATCCGAGTCACAATTAATCGAGGAAGAATATGTTGGTTCGGCAGATCCTTTGATAGAGATGAGCGCCGAGGCTGATGTAGATATGCACGAGGATGGAATGCATGACGGAGACGAggaggatgatgatgagctATTGGATGTGAAACCTCGTAAATCTCAACTCgatatgaaaattttaaaattcaaggCACGCCAGCGTCCAGCATCATCGAAAGCAATAAAGAAAGCAATGAccaaacagcatcagcagcacgCAGCTCTTAAAAAAGAATGTAAGGAAGATCTCAATGATGCCCTCGACCtcgcagcggctgctgttctACACGAGGGCCTTAGCTTGCAGAAAGCTGCTGATCGCTACGACATATCGAAAACCGTGCTATGGCGACGTGTGCGCTCGAATCCAGCCTACATGAGAATAAAACGGGAGAAACCTTCGCTTTCGGAAGCATATGAACGCCTAAAGAACGGCGACTCATTGAAGAGCATAAGCCAGGATCTGCACATACCTATGTCGACGCTGCATCGGCACAAAGTGCGTCTGGCCGCACAGGGCCGCCTGCCCGACTTTGTTGCTTGCCGGCGGCGTGACAGTACCCCAAAGGATGAGCTGCGTGAGAAGCTTGCAAAGGCAGTGCATGCCTGCCTCAACGATGGGATGACCCAAAATCATGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAACGGCGAACAACCGAGGCGGGGCGTAAAGTCAAGGAGGAGCATGAAGAAGAGGATGATATGAATTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSALLPEFLGAINLLGIKSAISFDTNPTSMTTSSVISGAMAVEEAKTISGLHIANTALMEEEEEEDTGAVVGKLEVDNSVLTNPQQQHEQEGRTLEFLDVYSEQPKITYSIEHMGGTTSGNQYIYTENTGTYTITQSSVGKLGVQGSSAVVDSVETAELGDEDVEAEVTDEHEESESQLIEEEYVGSADPLIEMSAEADVDMHEDGMHDGDEEDDDELLDVKPRKSQLDMKILKFKARQRPASSKAIKKAMTKQHQQHAALKKECKEDLNDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACLNDGMTQNHAANLFEIPKSTLWRHLQRRTTEAGRKVKEEHEEEDDMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00546570;
- 80% Identity
- iTF_00554486;