Basic Information

Insect: Drosophila buzzatii
Gene Symbol: -
Assembly: GCA_035045845.1
Location: JAWNOS010000505.1:8519022-8520596[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.4 1e+04 -3.5 0.1 12 22 124 134 123 135 0.84

2 4 1.4e-16 2.7e-13 49.6 0.0 2 45 357 400 356 400 0.95

3 4 0.06 1.1e+02 2.8 0.0 28 37 430 439 429 444 0.90

4 4 2.8e-18 5.3e-15 55.1 0.0 2 41 466 505 465 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.4	1e+04	-3.5	0.1	12	22	124	134	123	135	0.84
2	4	1.4e-16	2.7e-13	49.6	0.0	2	45	357	400	356	400	0.95
3	4	0.06	1.1e+02	2.8	0.0	28	37	430	439	429	444	0.90
4	4	2.8e-18	5.3e-15	55.1	0.0	2	41	466	505	465	507	0.96

Sequence Information

Coding Sequence: ATGGGCCACTCATCCACAATAATGGATATTCAGCGCGTTCTGCTCCATCAACAAAGCAACAATCAGCAATGCGAAGTTATGCTTGTAGCCAAAGATGGCATCAGCGTACGCGCCCATCTCTTCGTTCTAAGCACATGCAGCGATTTAATGCGCAATCTACTTGTCGATTTACCCGCCGGTCAGGAGGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGCTATCGTTTATTTACATGGGGGAAACTAGTTTAACCTCTGCCATGTTACCCGAGTTTCTCGGGGCCATTAATTTGCTGGGCATTAAGTCTGCCATAAGCTTTGATACAAATCCAACATCCATGACGACATCAAATGTTATGAGTGGCGCTATGGCCGTCGAAGAAGCTAAATCAATAAGCGGTTTACATATTGCAAATACAGCGCTaatggaggaggaggaagaggatGCAGGAGTAGTTGGCAAATTGGAAGTGGATAATGCCGTACTCGCAAATTCTCAACAGCAACACGAGCAAGAAGGCCGAACCCTAGAATTTCTGGATGTTTACAGCGAGCAGCCCAAAATAACATATTCAATCGAACACATGGGAGGCACAAGCAGTGGaaatcagtatatatatacagagaaCACGGGAACATTTACTATAACACAATCATCCGTTGCCAAGTTGGAAGTGCAGAACAGCTCAGCTGTGGTCGACTCTGTTGAGACAGCTGAGCTAGGTGAGGAAGATGTCGAAGCAGAGGTAACAGATGAACACGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTTGGATCGGCTGATCCTTTGATTGAGATGAGCGCTGAAGCGGATGTTGATCTGCATGAGGATGGAATACACGACGGAGACGAGGAAGAGGATGATGAGCTGTTGGACGTGAAGCCTCGTAAATCTCATCttgatatgaaaatattaaaattcaaatcacGACAGCGCCCAGCATCATCGAAAGCAATCAAAAAAGCAATGACCaaacagcatcaacagcacGCGGCTCTTAAAAAGGAATGCAAGGAGGATCTCAATGATGCCCTCGAcctagcagctgctgccgtaCTTCACGAAGGCCTCAGCTTGCAGAAGGCTGCTGATCGCTACGACATATCGAAGACAGTGCTATGGCGACGTGTACGTTCGAATCCAGCCTACATGAGAATAAAACGAGAGAAACCTTCGCTTTCAGAGGCATATGAACGCCTGAAGAACGGCGATTCGTTGAAAAGCATAAGTCAGGATCTGCATATACCCATGTCGACGCTGCATCGGCACAAGGTGCGTCTGGCAGCACAAGGTCGCCTGCCCGACTTTGTTGCTTGCCGGCGGCGTGACAGTACCCCAAAGGACGAGCTGCGAGAAAAGCTAGCAAAGGCAGTGCATGCCTGCATCAACGATGGCATGACCCAAAATCATGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAACGGCACACGAACGAGGCAGGGCGTAAAGTCAAGGAAGAGCATGAAGAAGAGGATGATGCgatgaattaa
Protein Sequence: MGHSSTIMDIQRVLLHQQSNNQQCEVMLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNVMSGAMAVEEAKSISGLHIANTALMEEEEEDAGVVGKLEVDNAVLANSQQQHEQEGRTLEFLDVYSEQPKITYSIEHMGGTSSGNQYIYTENTGTFTITQSSVAKLEVQNSSAVVDSVETAELGEEDVEAEVTDEHEESESQLIEEEYVGSADPLIEMSAEADVDLHEDGIHDGDEEEDDELLDVKPRKSHLDMKILKFKSRQRPASSKAIKKAMTKQHQQHAALKKECKEDLNDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINDGMTQNHAANLFEIPKSTLWRHLQRHTNEAGRKVKEEHEEEDDAMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00546570;
80% Identity: iTF_00493758;