Dnig016536.1
Basic Information
- Insect
- Drosophila nigricruria
- Gene Symbol
- -
- Assembly
- GCA_037075265.1
- Location
- JBAMCI010000227.1:8336140-8337723[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-16 2.3e-13 49.7 0.0 2 45 359 402 358 402 0.95 2 3 0.06 1.1e+02 2.8 0.0 28 37 432 441 431 446 0.90 3 3 3.1e-18 5.5e-15 54.9 0.0 2 42 468 508 467 510 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGCATTCTGCTACATCAACAAAGCAACAATCAGCAATGCGAAGTATTGCTGGTGGCCAAAGATGGCATCAGTGTGCGCGCCCATCTCTTCGTCCTGAGCACTTGCAGCGATTTGATGCGCAATCTGTTGGTCGATTTGCCCGCCGGCCAGGAGGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTTTTGTCGTTTATTTACATGGGGGAGACCAGTTTGACCTCTGCCATGCTGCCCGAGTTTCTCGGAGCCATTAATTTGCTCGGCATCAAGTCGGCCATCAGCTTCGATACCAATCCCACATCCATGACCACCTCAAATGTTATAAGTGGCGCCATGGCAGTCGAGGAAGCCAAGTCAATTAGCGGCTTACATATTGCGAACACAGCTCTtatggaggaggaggaggaagaagaTGCGGGAGCTGTAGTTGGTAAACTGGAAGTGGATAGTGGCGTACTCACAAATCCTCAACAGCAGCACGAGCAGGAAGGCCGAACCCTAGAATTCCTGGATGTGTACGGCGAACAGCCCAAGATAACATATTCCATCGAACACATGGGTGGCACAACCAGtggaaatcagtatatatatacagagaatACGGGAACATTTACTATAACACAAACTCCCGTGGGCAAGTTGGGAGTGCAGGGCAACGCAGCTGTGGTGGACTCTGTGGAGGCGGCTGAGCTAGGCGACGAGGATGTCGAGGCAGAGGTAACAGACGAGCACGATGAATCCGAGTCACAGTTAATCGAGGAGGAATACGTTGGTTCGGCTGATCCTTTAATAGAGATGAGCGCAGAGGCGGATGTCGACATGCACGAGGATGGAATGCATGATGGCGACGAGGACGAGGATGACGAGCTGCTGGATGTGAAACCTCGTAAGTCTCATCTCGACATGAAAATGTTAAAGTCCAAGGCACGCCAGCGTCCAGCCTCATCAAAGGCAACGAAGAAAGCAATGACcaaacagcatcagcaacacGCAGCACTTAAAAAGGAATGCAAGGAGGACATCAATGATGCCCTCGACCTCGCAGCGGCTGCTGTACTCCACGAAGGCCTCAGCCTGCAGAAAGCTGCCGATCGCTACGACATATCGAAAACCGTGCTGTGGCGACGTGTGCGTTCCAATCCAGCCTACATGCGAATAAAGCGAGAAAAGCCTTCGCTATCGGAGGCGTATGAGCGCCTGAAGAACGGTGATTCGTTGAAGAGCATAAGTCAGGATCTGCATATACCCATGTCGACGCTGCATCGGCACAAGGTGCGTCTGGCGGCCCAGGGTCGCCTGCCCGATTTCGTGGCTTGCCGGCGGCGTGACAGCACACCAAAGGATGAGCTGCGTGAGAAGCTAGCAAAGGCAGTCCATGCCTGCATCAACGATGGCATGACCCAAAATCATGCAGCAAATCTCTTTGAAATACCAAAGAGCACACTCTGGCGACACTTGCAGCGGCGCGTGACCGAAGCGGAGCGTAAAGTCAAGGAAGAGCATGAAGAAGAGGATGATGATGTTATGAATTAA
- Protein Sequence
- MGHSSTIMDIQRILLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNVISGAMAVEEAKSISGLHIANTALMEEEEEEDAGAVVGKLEVDSGVLTNPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYIYTENTGTFTITQTPVGKLGVQGNAAVVDSVEAAELGDEDVEAEVTDEHDESESQLIEEEYVGSADPLIEMSAEADVDMHEDGMHDGDEDEDDELLDVKPRKSHLDMKMLKSKARQRPASSKATKKAMTKQHQQHAALKKECKEDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINDGMTQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEHEEEDDDVMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00546570;
- 80% Identity
- iTF_00559596;