Basic Information

Insect: Drosophila stalkeri
Gene Symbol: -
Assembly: GCA_035047405.1
Location: JAWNPR010000041.1:12414765-12416336[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.3e-16 2.5e-13 49.6 0.0 2 45 357 400 356 400 0.95

2 3 0.054 1e+02 2.8 0.0 28 37 430 439 429 444 0.90

3 3 4.5e-18 8.5e-15 54.3 0.0 2 41 466 505 465 507 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.3e-16	2.5e-13	49.6	2	45	357	400	356	400	0.95
2	3	0.054	1e+02	2.8	28	37	430	439	429	444	0.90
3	3	4.5e-18	8.5e-15	54.3	2	41	466	505	465	507	0.96

Sequence Information

Coding Sequence: ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTCCATCAACAAAGCAACAATCAGCAATGCGAAGTAATGCTTGTAGCCAAAGATGGCATCAGCGTACGCGCCCATCTCTTCGTTCTAAGCACATGCAGCGATTTAATGCGCAATCTACTTGTCGATTTACCCGCCGGTCAGGAGGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGCTATCGTTTATTTACATGGGGGAAACTAGTTTAACCTCTGCCATGCTACCCGAGTTTCTCGGGGCCATTAATTTGCTGGGAATAAAGTCTGCCATAAGCTTTGATACCAATCCAACATCCATGACGACATCAAATATTATGAGTGGCGCTATGGCCGTCGAAGAAGCTAAATCAATAAGCGGTTTACATATTGCAAATACAGCGCTaatggaggaggaggaagaggatGCGGGAGTAGTTGGCAAATTGGAAGTGGATAATGCCGTACTCACAAACCCTCAACAGCAGCACGAGCAAGAAGGCCGAACCCTAGAATTTCTGGATGTTTACAGCGAGCAGCCCAAAATAACATATTCAATCGAACACATGGGCGGCACAAGCAGTGGaaatcagtatatatatacagagaacACGGGAACATTTACTATAACACAATCATCCGTGGCCAAGCTAGAAGTGCAAGGCAGCTCAGCTGTGGTTGACTCTGTTGAGACAGCTGAGCTAGGTGAGGAAGATGTCGAAGCAGAGGTAACAGACGAACACGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTTGGATCGGCTGATCCTTTGATTGAAATGACCGCTGAAGCGGATGTTGATCTGCATGAGGATGGAATACACGATGGAGACGAGGAAGAAGATGATGAGCTGTTGGACGTGAAGCCTCGTAAATCTCATCttgatatgaaaatattaaaattcaaatcacGACAGCGCCCAGCATCATCGAAAGCAATCAAAAAAGCAATGACcaaacagcatcaacagcatgCAGCTCTTAAAAAGGAATGTAAGGAGGATCTCAATGATGCCCTCGACctcgcagctgctgccgtACTTCACGAAGGCCTCAGCTTGCAGAAAGCTGCTGATCGCTACGATATATCGAAGACAGTGCTATGGCGACGTGTACGTTCGAATCCAGCCTACATGAGAATAAAACGAGAGAAGCCTTCGCTTTCAGAGGCATATGAACGCCTGAAGAACGGCGATTCGTTAAAAAGCATAAGTCAGGATCTGCATATACCCATGTCGACGCTGCATCGGCACAAGGTGCGTCTGGCAGCACAGGGTCGCTTGCCCGACTTTGTTGCTTGCCGGCGGCGTGACAGTACCCCAAAGGACGAGCTGCGAGAAAAGCTAGCAAAGGCAGTGCATGCCTGCATCAACGATGGCATGACCCAAAATCATGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAACGGCGAACAAACGAGGCAGGGCGTAAAGTCAAGGAAGAGCATGAAGAAGAGGATGTGATgctatga
Protein Sequence: MGHSSTIMDIQRVLLHQQSNNQQCEVMLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNIMSGAMAVEEAKSISGLHIANTALMEEEEEDAGVVGKLEVDNAVLTNPQQQHEQEGRTLEFLDVYSEQPKITYSIEHMGGTSSGNQYIYTENTGTFTITQSSVAKLEVQGSSAVVDSVETAELGEEDVEAEVTDEHEESESQLIEEEYVGSADPLIEMTAEADVDLHEDGIHDGDEEEDDELLDVKPRKSHLDMKILKFKSRQRPASSKAIKKAMTKQHQQHAALKKECKEDLNDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINDGMTQNHAANLFEIPKSTLWRHLQRRTNEAGRKVKEEHEEEDVML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00546570;
80% Identity: iTF_00599694;