Danc010208.1
Basic Information
- Insect
- Drosophila anceps
- Gene Symbol
- -
- Assembly
- GCA_035045945.1
- Location
- JAWNON010000186.1:1349256-1350836[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-16 2.5e-13 49.5 0.0 2 45 358 401 357 401 0.95 2 3 0.066 1e+02 2.8 0.0 28 37 431 440 430 445 0.90 3 3 7e-18 1.1e-14 53.9 0.0 2 41 467 506 466 510 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTACATCAACAAAGCAACAATCAGCAATGCGAAGTATTGCTGGTGGCCAAAGATGGCATCAGCGTACGCGCccatctttttgttttaagcaCTTGCAGCGATTTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGTCAGGAGGCGACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTTGAGAATGTGTTGTCGTTTATTTACATGGGGGAAACTAGTTTGACCTCTGCCATGCTGCCCGAATTTCTTGGGGCCATTAATTTACTGGGAATCAAGTCTGCCATAAGCTTTGATACCAATCCCACATCCATGACGACGTCAAATGTTATAAGTGGCGCTATGGCTGTCGAGGAAGCCAAATCAATTAGCGGCTTACATATTGCAAATACAGCTCTtatggaggaggaggaagaagaTGCGGCAGCTGTAGTTGGTAAATTGGAAGTGGATAGTGGCGTACTCACAAATCCTCAACATCAGCACGAGCAGGAGGGCCGAACCCTAGAATTCCTAGATGTATACGGCGAACAGCCCAAAATCACATATTCAATCGAACACATGGGCGGCACAACCAGCGGaaatcagtatatatatacagagaatACGGGAACATTTACCATAACACAATCATCCGTGGCCAAGTTGGGAGTGCAAGGCAGCTCAGCTGTGGTCGACTCTGTGGAGGCAGCTGAGCTGGGCGACGAGGATGTCGAAGCAGAGGTTACAGACGAGCACGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTAGGATCGGCTGATCCTTTAATAGAGATGAGCGCAGAGGCGGATGTTGATATGCATGACGATGGAATGCATGATGGcgacgaggaggaggatgaTGAGCTGTTGGATGTGAAACCTCGCAAGTCTCATCTCgatatgaaaatgttaaaatctAAGGCACGCCAGCGTTCAGCATCATCGAAGGCAACGAAGAAAGCAATGACcaaacagcatcaacaacaagcagcactTAAAAAAGAATGCAAAGAGGATATCAATGAAGCCCTCGAcctggctgcggctgccgtaCTTCACGAAGGCCTCAGTTTGCAAAAGGCTGCTGATCGCTACGACATATCGAAAACTGTGCTATGGCGACGTGTGCGCTCGAATCCAGCGTACATGAGAATAAAACGAGAAAAGCCTTCGCTTTCCGAAGCGTATGAACGCCTGAAGAACGGCGATTCGTTGAAAAGCATAAGCCAGGATCTGCATATCCCCATGTCAACACTGCATCGGCACAAGGTGCGTCTGGCGGCACAGGGTCGCCTGCCCGACTTCGTTGCTTGCCGGCGACGCGACAGCACCCCAAAGGATGAGCTGCGTGAAAAGCTAGCAAAGGCTGTGCATGCCTGCATTAACGATGGCATGACCCAAAATCACGCAGCTAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAGCGGCGCGGGAACGAGGCGCAGCGTAAAGTCAAAGAGGAACATGAAGAAGAGGATGATGATGTtatgaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNVISGAMAVEEAKSISGLHIANTALMEEEEEDAAAVVGKLEVDSGVLTNPQHQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYIYTENTGTFTITQSSVAKLGVQGSSAVVDSVEAAELGDEDVEAEVTDEHEESESQLIEEEYVGSADPLIEMSAEADVDMHDDGMHDGDEEEDDELLDVKPRKSHLDMKMLKSKARQRSASSKATKKAMTKQHQQQAALKKECKEDINEALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINDGMTQNHAANLFEIPKSTLWRHLQRRGNEAQRKVKEEHEEEDDDVMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00546570;
- 80% Identity
- iTF_00476732;