Basic Information

Insect: Drosophila paranaensis
Gene Symbol: -
Assembly: GCA_035047545.1
Location: JAWNPL010000145.1:16380250-16381800[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.6e-16 2.1e-13 49.8 0.0 2 45 348 391 347 391 0.95

2 3 0.075 97 2.8 0.0 28 37 421 430 420 435 0.90

3 3 2.7e-18 3.5e-15 55.4 0.0 2 40 457 495 456 497 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.6e-16	2.1e-13	49.8	2	45	348	391	347	391	0.95
2	3	0.075	97	2.8	28	37	421	430	420	435	0.90
3	3	2.7e-18	3.5e-15	55.4	2	40	457	495	456	497	0.96

Sequence Information

Coding Sequence: ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGCATCAACAAAGCAACAATCAGCAATGCGAAGTATTGCTTGTGGCCAAAGATGGCATCAGTGTACGCGCCCATCTCTTCGTCCTGAGCACTTGCAGCGATCTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGCTATCGTTTATTTACATGGGGGAAACCAGTTTGACCTCTGCCATGCTGCCCGAGTTTCTCGGGGCCATCAATTTGCTGGGCATCAAGTCGGCTATAAGCTTTGATACCAATCCCACATCCATGACGACCTCGAATGTTATAAGTGGCGCCATGGCAGTCGAGGAAGCCAAATCCATTAGCGGCTTACATATTGCGAACACAGCTCTTAtggaggaagaggaagaagaagatgcGGGAGCTGTGGTTGGTAAACTGGAAGTCGATAATACCGGGCTCACAAATCCTCAACAGCAGCACGAGCAGGAAGGCCGAACCCTGGAATTCCTAGATGTGTACGGCGAACAGCCCAAAATCACATATTCCATCGAACACATGGGCGGAACAACCAGCGGgaatcagtatatatatacagagaatACGGGAACATTTACCATAACACAATCATCAGTGGCCAAGTTGGGAGTGCAAGGCAGCACAGCTGTGGTGGACTCTGTGGAGACGGGTGAGCTAGGCGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTTGGATCGGCTGATCCCTTAATAGAGATGAGCGCAGAAGCAGATGTGGATATGCATGAGGATGGAATGCATGATGGagacgaggacgaggatgaTGAACTGTTGGATGTGAAGCCTCGCAAATCTCATCTCGAtatgaaaatactaaaatcCAAGGCACGCCAGCGTCAGCCAGCATCAATGAAGGCATCGAAGAAGGCAATGACcaaacagcatcagcaacacgCAGCACTCAAAAAGGAATGCAAGGAGGATATCAATGATGCCCTCGAcctcgcagctgcagccgtaCTGCACGAAGGCCTCAGCCTGCAGAAAGCTGCTGATCGCTACGACATATCGAAGACCGTGCTGTGGCGACGCGTGCGTTCCAATCCTGCCTACATGAGAATAAAGCGAGAGAAGCCTTCGCTTTCTGAAGCGTATGAACGCCTGAAGAACGGCGATTCGCTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCGACGCTGCACCGGCACAAGGTGCGTCTTGCGGCACAGGGTCGCCTGCCTGACTTCGTTGCTTGCCGGCGGCGGGACAGCACTCCAAAGGATGAGCTGCGTGAGAAGCTAGCAAAGGCAGTCCATGCCTGCATCAACGAAGGAATGACCCAGAATCATGCAGCAAATCTCTTTGAAATACCTAAGAGCACGCTCTGGCGGCACTTGCAACGGCGCGTCGTCGAAGCGGAGCGTAAAGTCAAGGAAGAACATGAGGAAGAGGATGATGATGTTATGAATTAA
Protein Sequence: MGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNVISGAMAVEEAKSISGLHIANTALMEEEEEEDAGAVVGKLEVDNTGLTNPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYIYTENTGTFTITQSSVAKLGVQGSTAVVDSVETGELGEESESQLIEEEYVGSADPLIEMSAEADVDMHEDGMHDGDEDEDDELLDVKPRKSHLDMKILKSKARQRQPASMKASKKAMTKQHQQHAALKKECKEDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINEGMTQNHAANLFEIPKSTLWRHLQRRVVEAERKVKEEHEEEDDDVMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00546570;
80% Identity: iTF_00568360;