Basic Information

Insect: Drosophila repleta
Gene Symbol: -
Assembly: GCA_018903745.1
Location: JAEIGN010000753.1:1694158-1696049[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 8.5e-17 1.6e-13 49.9 0.0 2 45 366 409 365 409 0.95

2 3 0.04 78 2.9 0.0 28 37 439 448 438 453 0.90

3 3 0.0072 14 5.3 0.0 2 15 475 488 474 489 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	8.5e-17	1.6e-13	49.9	2	45	366	409	365	409	0.95
2	3	0.04	78	2.9	28	37	439	448	438	453	0.90
3	3	0.0072	14	5.3	2	15	475	488	474	489	0.90

Sequence Information

Coding Sequence: ATGAATCACCTCAAATGGATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGCATCAACAAAGCAACAATCAGCAATGCGAAGTATTGCTTGTGGCCAAAGATGGCATCAGTGTACGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATTTTGCCAGACATCCGTGGTGAGCTGCTCGAGAATGTGCTATCATTTATTTACATGGGGGAAACCAGTTTGACCTCTGCCATGCTGCCCGAGTTTCTCGGGGCCATCAATTTGCTGGGCATCAAGTCGGCCATAAGCTTTGATACCAATCCCACATCCATGACGACCTCGAATGTTATAAGTGGCGCCATGGCAGTCGAGGAAGCCAAATCCATCAGCGGCTTACATATTGCGAACACAGCTCTTATGGAGGAGGAAGAAGAAGAAGATGCGGGAGCTGTGGTTGGCAAACTGGAAGTCGATAATACCGGACTCACAAATCCTCAACAGCAGCACGAGCAGGAAGGCCGAACCCTTGAATTCCTGGATGTGTACGGCGAACAGCCCAAAATCACATATTCCATCGAACACATGGGCGGCACAACCAGTGGGAATCAGTATATATATACAGAGAATACGGGAACATTTACTATAACACAATCATCAGTGGCCAAGTTGGGAGTGCAAGGCAGCACAGCTGTGGTGGACTCTGTGGAGACAGGTGAGCTAGGCGAAGAGGATGTGGAGGCAGAGGTAACGGACGAGCAGGAAGAATCCGAGTCACAATTAATCGAGGAGGAATATGTTGGATCGGCTGATCCCTTAATAGAGATGAGCGCAGAGGCGGATGTGGATATGCATGAGGATGGAATGCATGATGGAGATGAGGACGAGGATGATGAACTGTTGGATGTGAAGCCTCGCAAATCTCATCTCGATATGAAAATACTTAAATCCAAGGCACGCCAGCGTCAGCCAGCATCAATGAAGGCATCGAAGAAAGCAATGACCAAACAGCATCAGCAACACGCGGCACTCAAAAAGGAATGCAAGGAAGATATCAATGATGCCCTCGACCTCGCAGCTGCAGCCGTACTGCACGAAGGCCTCAGCCTGCAGAAAGCTGCTGATCGCTACGACATATCGAAGACCGTGCTGTGGCGACGTGTGCGTTCCAATCCTGCCTACATGAGAATAAAGCGTGAGAAGCCTTCGCTTTCTGAAGCGTATGAACGCCTGAAGAACGGCGATTCGCTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCGACGCTGCACCGGCACAAAGTGCGTCTTGCGGCACAGGGTCGCCTGCCGGACTTCGTTGCTTGCCGGCGGCGGGACAGCACCCCAAAGGATGAGCTGCGTGAGAAGCTAGCAAAGGCAGTCCATGCCTGCATCAACGAAGATCGCCAATAG
Protein Sequence: MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLENVLSFIYMGETSLTSAMLPEFLGAINLLGIKSAISFDTNPTSMTTSNVISGAMAVEEAKSISGLHIANTALMEEEEEEDAGAVVGKLEVDNTGLTNPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYIYTENTGTFTITQSSVAKLGVQGSTAVVDSVETGELGEEDVEAEVTDEQEESESQLIEEEYVGSADPLIEMSAEADVDMHEDGMHDGDEDEDDELLDVKPRKSHLDMKILKSKARQRQPASMKASKKAMTKQHQQHAALKKECKEDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINEDRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00546570;
80% Identity: iTF_00586783;