Cvom010635.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
RREB1
Assembly
GCA_942486075.2
Location
CALNXM020000261.1:429616-435685[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.032 1.5 9.6 1.7 1 21 228 248 228 250 0.95
2 14 0.00054 0.026 15.2 0.2 1 23 260 282 260 282 0.98
3 14 3.8e-05 0.0018 18.8 7.5 1 23 288 310 288 310 0.98
4 14 3.5 1.7e+02 3.2 0.1 2 23 530 553 529 553 0.92
5 14 0.44 21 6.0 4.0 2 19 559 576 559 576 0.98
6 14 0.031 1.5 9.6 0.0 1 23 720 742 720 742 0.97
7 14 1.8e-05 0.0009 19.8 1.2 1 23 752 774 752 774 0.99
8 14 0.0013 0.066 13.9 2.0 1 23 780 803 780 803 0.97
9 14 0.0048 0.23 12.2 2.0 1 23 1155 1178 1155 1178 0.95
10 14 0.00029 0.014 16.0 1.0 3 23 1517 1537 1515 1537 0.97
11 14 0.23 11 6.9 6.3 1 23 1543 1566 1543 1566 0.97
12 14 6.9 3.4e+02 2.2 3.9 1 23 1667 1690 1667 1690 0.92
13 14 0.14 6.7 7.6 1.1 3 23 1743 1763 1742 1763 0.91
14 14 0.0016 0.078 13.7 5.7 1 23 1769 1791 1769 1791 0.99

Sequence Information

Coding Sequence
ATGTTAGTAGCCACAAATGCCCAACAAACTGCCCAAAACAGCCCTAAAACCACTAGAGCTAATACGCCTATTAAGATGGAAAGAAGAGATTCTTCCTCATCCTACTCGTCATTGGAAGATTTGGAGCAAGAAGGTAAAAAATTAAATGCTGTAACCTCTACGCCGGTGGTGACTAGTGATGCCACAGTTTCTTGCGCTGTTAGTTCCATAACAAGATCAAGTCAAAGAACAGACATGGAGGGTCAACAGCTTAGCCTGCATCAGCGCATGCAAGAGTCTGATGATGCTAATGACTACGATGAAGACGAATCGGCTGATGAGAAATCTTCACAGCCACGTCAGCAATTGCATTACAAACGTCGTCTCAGCGGTCGCAGTCTCACGGATAAAACAGCCAGTGTTCTTCTAGAGTACAATGCTGATAACCCAAATTCTTTGCGCAAGAAATTCCGCTTCAACCGCATTGTCATGAGCAATCGCGATGAGTCGGGTTTCGTTGATACCAGCAACAATAGCCAGTTGATGAATACATCATCCTCAACGTTGGCAGTTGCCGCAACAAATCTATCCAACTCGAATAATGTTGCAAAATCAAACAGTTCTTCGGATACCTCATCGCCGCCTCAAAGCAATGGCAATTCTAGTCCCGAATCGGGCATCGGAGAGCGTGAGGATATGAAATATATGTGTCCCATCTGTGATGCAGTCTCACAAACCGCCCATCAATTCACCAATCATATACGTTGTCACAATTACGCCTCAGGTCATACGGAGAACTTTACCTGTCGTATTTGCTCTAAGGTGCTCTCATCTGCCTCATCATTGGATCGTCATGTTCTAGTGCATACGGGAGAACGGCCGTTCAATTGTAAATATTGTCATCTCACATTTACCACAAACGGGAACATGCATCGTCATATGCGTACCCATAAGCAGCATCAGCATACTCATCATCGACGCAACTCGAATGGAACAAAGTTCAACTCAAACAATAACAATAATTATAATAGTAACAATACAACATCAACAACGACTCCAGCTGTAAGTAAAACAACATTAAGCAATGGACAATTAAGTGAAGGCGTTAAATTATCAACAACAACAGTAGCAGACACAACGACGTCGACAACACCAACAGCAACGCCATTATCACCAGCAGCAGCAGCAGAAACAAACGCTGTCTGTGCTGCTGACAATGATGATAATCAAAAGGCAACAGGTGCTAATGGCAAACAATTAAATGGTAACGCCAACTTAGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGACTCGTCAACAGGCCATGTTTGTAACAATAATAATAATAACAACAACAACAATGATAATGACAACCAAAATAATAACAACAATAATGATTTAAAAATTAACAATAATAACTATAAACGTAAACACAGTGAAGATCAGCCGCCTCAAGATGTAGTGGATTCTATAGATAACACTCATGATCTGCTAAAACGACGTTTGAGGCCAGACATCAACATCAACAACACCACCAACGCCTCACCTATCAACTCCCATGACAACCATAACGACCTGGTAAGCAGAATAACCCGTGAATCAGTTGTTTGTCCTGTTTGCAACGATACAGATTTTACGGATAATCTGGCACTTGATCAGCATATGGATAATAAACATCCGGAAATACCAGCCAAATGTAAACACTGTGATGTATTGTTTCGCACGCATCATCAGCTCAACATACATCCCTGCTCAGCCGATATTAAGGGGTCTATCAATTTATCGGTTAAGCATCGTCGTTTGAGTGAAAGTTCAAATCATAATCATCATGGGGAAGAAGATCGTGAGGAATCGGATGATCATGTAAGGCAACGACATGAACTATTCCAACACTTTAAGAATGCCATGGCCCATAGCAATTCACATTCCTCGCATTTTAATCAAGATCTCACTGAGGATGACATCAAATCGGAACCATCGGCTCATGACTCAAAAGATTTGGCTGATATTCAATCGATTTTGAATATGACAGCATCATCGAGTAATTCGAATTTACTGAGGAACTTTGAGCAATCGGTAAATACACCTTCATCACAATACAGCTATGACAGAGATGAAGAGGAAGCTCAAGATGCTTTCACCTCAGAATTCCGTAAAATGAAATTGCGTGGCGAATTTCCTTGCAAGTTGTGCCCAGCAGTATATCCCAATTTACGAGCTCTAAAAGGCCATAATCGTGTGCATTTGAGTGAGGCTGGCCCCGCCGGTCCCTTCCGTTGCAACATGTGTCCCTATTCGATATGTGACAAGGCCGCCTTGATTCGCCATATGCGTACACATAATGGTGATCGTCCCTATGAGTGCGCTGTGTGCAATTATGCCTTTACCACCAAAGCCAATTGTGAAAGACATTTGCGCAATCGCCATGCTAAAACCACTCGCGAGGAAGTTAAACGTGCCATTATTTACCACCCTTCAGAAGATTCATCCTGCGAAGATACTACCAAAAAATTGCACATGTTTTCATCCGAGCTGGAAGATGATTGTGATTTAATGTCGTATCATCAACACCAACCCAAAGATCGTTCAACTCCCGTGTCTCATCTCAAAGAAAGATTGACTTCTGGCGACAGTCCTTCTTCGAAACCAGTTAAGATTCAGGTTAAAAACCTAGAAGAACTGTTAGATAAATCAACTGCTTCGTCCGGCTATCACGATAGCTACGATAAACGCAACATTGATATATCTCAAGCCCCAATTGATATGAGTATGGATGTTTTGGATTTGAGTAAAAAACCCAGTGCACCTCAACATCCAGTCCAAGAAGAAAAGGTTGAGTCATCTTTACCTATGCTATCATTACCGAAACCAGATGCTAATCTTAGTAATGAAATAATTAACAGCAAGATATTACCAACAGAGGCTATCCCAAAATTGGATGCATCAGCTTTGGATAAACAGCACCAGCAATTGCTTTTAGCTCAGCAACAATTATTGAGTGATCCAAATCAATTAATGCAGCAATTATATCGAAATCTACTATTTCCCCAATTTCCTCCATTCTTTATGCCCAACACTTTCATGAACAACAATTTCACCGATTTTCAAAAACTTGCACCCATTCTGACACGTATGATGGGCGGAGTTGCTGCAGCAAATTTACCAACCAACGATATGGAAAAGCCATCAACTCCAACACCTCTGAATCCCATTAACCCTTCAAACATGCCGCAAATGAGTCCATTAATGTCGGAAAAGTCTAACTCAGCAACATTGGGATCAATGTCATCACCCAAGAGTCTACTTTCGCCAAATCCAAATCATTTATCTATGCCTAGGCATATGATGGCATCTCCAGCATCTTCACATCCTCCAAATCTGCCGCCTACAATGCTTTCAAATGGTCCCATCAAAATGGTGCTCAAAAATGGTGTATTCATGCCCAAACAAAAACAAAGACGTTATCGTACAGAACGTCCCTTTGCCTGTGAACACTGTTCAGCTCGTTTTACTTTGCGCTCCAATATGGAACGACATGTCAAGCAACAACATCCCCAGTACTATGCCCAGCGTCAACGCAGTGGACATCATGTTATGCGTGGTCGAGGAGCAAGCAGTGCTGCTAATATGAACAACATCACTCATTTGCAAGCTGCCGTGGCCCAGGCTCATTATGGCTCTACACCACCCTCGATGAGTTCCCATTCTCCAATTTCGGATCAAGTTAAATGTGCCATATTGGCACAACAACTTAAGGCTCGCAAAGACACCGATCTGCTACAACAAGCCTTAGCTCATGGGTCCAACAGTGTTGCCAATTCAAGTATGTTTTCTCAACAAGGACCTAATCTCAGCAATGGACAAACACCCTTTTTTGGGTTCAATCCTCATCACAGCCATCATCTAAGTCAAAACGGTACACCTAATGGTTCCATGGAAGATGACGAACCTAAGTTAATTATTGATGAAGATGATGAAGAGGAGGAAGAAGATGAGGACGACATTGAGGAAATTCCCGATGATCAGGAAGAAGATGAAGAACAGGATTTGGTGTTGACTGAATGCGAAGATAAATTAGAATCACGTCATTTACCCACTACTGTTGAAGAAGTTAAGCTCAAGTCTGACCCTCCCCAAGAATCGGCTAAAAAGGTGGCTGAATCAATATTGGAACAAGCCATTAAAGCCAGGCAAAATATCAGCTCTTTTGTTAAAACATCAGAACCTCCTACGGTGACCTCTAACAATAATACCATGAAATCGATGATTGCTCAAGCTCCAGCAGTGGGAAAATTTTTAAAAGAAGTGGCAAGTTCTTCATTTAAAGATGAATCTCAAGACTTGGTTTCAGTCTCCGAATTAGTAGATAATGCCACAAACAATGCGGTGTCATTCAACAACTATTTCCGTCCATCTGATGTGGCCAACCATATGGAGCCAAGCGATGAAGATGGTTTAGTCGCATCTTCAGCCAGTGAAAGTAATAATTCGGGAGCCGAAGATACCATCAGCACTGAAAAACCAAAAAAGAAGTCAGCCTATAGTTTGGCACCCAATCGAGTCCATTGCCCCTACTGTCAACGTATGTTCCCTTGGTCCAGTTCCTTGAGAAGACATATTCTCACCCATACGGGACAAAAACCCTTCAAGTGCTCTCACTGTCCTCTCTTGTTTACCACCAAAAGTAATTGTGATCGTCATCTTTTGCGAAAACATGGAGATGTGGAGTCTGCTGTATCTGTCTATGTACCAACTGAGGACGTTTCCGAACCTATTCCTTTGCCCAAATCAGTGGAAGAGATCGAGAGAATGCAAAGAGAACGTGATGAAGAGGAACGCAAACGTAAAGCCGAAGAACAACGAGAACGTTTAGAGAAAGAACAAATGGAAAAGCAAAAATTCGAACAGGAACAGCAACAAAAACAAGCATTCCTAAAACATTTAGCTGTAGCACAATTTCAACAGCAATTCAACCAAAAACCCGAAGCTAATCCTGTATCTTCATCAGAACTACCCTATAAATGCCACTTGTGCGAAAGTTCCTTTTCTGAACGCTTACAGTGCCTAGAACATATCAAATCTTTGCATGCCCAGGAATTTGCTCTATTGCTGTCCAAAGGAGCCATCGAAAATGAAACTGACTCAGCTCAAATGACTTCAAACGAAGAGGATGAACGTCAACGATCTACCGAAGATGCCGGCAAAGGTGGCAAATATCCCGACTACAGTAATCGTAAAGTCATCTGTGCCTTTTGCATGAGACGTTTCTGGTCAACTGAAGATCTCCGTAGACATATGCGTACTCATTCCGGCGAAAGACCATTCCAGTGCGAAATCTGCTTTAGAAAGTTCACCCTAAAACACAGCATGCTTAGACACATGAAAAAACACAATGGCCTCCACATGAACGGCAGTCAATCGAACAATGATAATTTGACCAATGGAAATTCCGGCTCTGATTACTCTGACGATGAACAAAGTCCAAGTACAATGCCTACACCAGCCATGCCAATGCCCAGTACCAGCATTAATGCTCTATTGATGGGCTCAAAATTCCAAGAACTGCTGAATAAGGCAAACGAATGGAGAAACGGTAGTTTGAATGCATTGCGCGAAGGTAAAGAAAACAATTCAGAGGAGACAAACACACTACAGTCATCAGATTTAATTGGCAATTTGCTGGGAATTAGTGATCAGGGTATATTGAACAAATTAATGTCATCGCCTGATGAAGCGGCCAAATTCTTAGGTGTCGACAAGTAA
Protein Sequence
MLVATNAQQTAQNSPKTTRANTPIKMERRDSSSSYSSLEDLEQEGKKLNAVTSTPVVTSDATVSCAVSSITRSSQRTDMEGQQLSLHQRMQESDDANDYDEDESADEKSSQPRQQLHYKRRLSGRSLTDKTASVLLEYNADNPNSLRKKFRFNRIVMSNRDESGFVDTSNNSQLMNTSSSTLAVAATNLSNSNNVAKSNSSSDTSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSNNNNNYNSNNTTSTTTPAVSKTTLSNGQLSEGVKLSTTTVADTTTSTTPTATPLSPAAAAETNAVCAADNDDNQKATGANGKQLNGNANLESYESDGGCSSDSSTGHVCNNNNNNNNNNDNDNQNNNNNNDLKINNNNYKRKHSEDQPPQDVVDSIDNTHDLLKRRLRPDININNTTNASPINSHDNHNDLVSRITRESVVCPVCNDTDFTDNLALDQHMDNKHPEIPAKCKHCDVLFRTHHQLNIHPCSADIKGSINLSVKHRRLSESSNHNHHGEEDREESDDHVRQRHELFQHFKNAMAHSNSHSSHFNQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCPAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCEDTTKKLHMFSSELEDDCDLMSYHQHQPKDRSTPVSHLKERLTSGDSPSSKPVKIQVKNLEELLDKSTASSGYHDSYDKRNIDISQAPIDMSMDVLDLSKKPSAPQHPVQEEKVESSLPMLSLPKPDANLSNEIINSKILPTEAIPKLDASALDKQHQQLLLAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNNNFTDFQKLAPILTRMMGGVAAANLPTNDMEKPSTPTPLNPINPSNMPQMSPLMSEKSNSATLGSMSSPKSLLSPNPNHLSMPRHMMASPASSHPPNLPPTMLSNGPIKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRSGHHVMRGRGASSAANMNNITHLQAAVAQAHYGSTPPSMSSHSPISDQVKCAILAQQLKARKDTDLLQQALAHGSNSVANSSMFSQQGPNLSNGQTPFFGFNPHHSHHLSQNGTPNGSMEDDEPKLIIDEDDEEEEEDEDDIEEIPDDQEEDEEQDLVLTECEDKLESRHLPTTVEEVKLKSDPPQESAKKVAESILEQAIKARQNISSFVKTSEPPTVTSNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNAVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTISTEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQRERDEEERKRKAEEQRERLEKEQMEKQKFEQEQQQKQAFLKHLAVAQFQQQFNQKPEANPVSSSELPYKCHLCESSFSERLQCLEHIKSLHAQEFALLLSKGAIENETDSAQMTSNEEDERQRSTEDAGKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHMNGSQSNNDNLTNGNSGSDYSDDEQSPSTMPTPAMPMPSTSINALLMGSKFQELLNKANEWRNGSLNALREGKENNSEETNTLQSSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVDK