Basic Information

Insect: Protophormia terraenovae
Gene Symbol: RREB1
Assembly: GCA_951394005.1
Location: OX596076.1:100708727-100714798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.031 3 9.6 1.7 1 21 236 256 236 258 0.95

2 13 0.00053 0.05 15.1 0.2 1 23 268 290 268 290 0.98

3 13 3.7e-05 0.0035 18.8 7.5 1 23 296 318 296 318 0.98

4 13 6.3 6e+02 2.3 0.4 3 23 548 570 547 570 0.88

5 13 0.17 17 7.2 4.4 2 21 576 595 575 596 0.93

6 13 0.06 5.7 8.7 0.1 1 23 736 758 736 758 0.97

7 13 1.8e-05 0.0017 19.8 1.2 1 23 768 790 768 790 0.99

8 13 0.0013 0.12 13.9 2.0 1 23 796 819 796 819 0.97

9 13 0.0047 0.45 12.2 2.0 1 23 1174 1197 1174 1197 0.95

10 13 0.00029 0.027 16.0 1.0 3 23 1538 1558 1536 1558 0.97

11 13 0.23 22 6.9 6.3 1 23 1564 1587 1564 1587 0.97

12 13 0.13 13 7.6 1.1 3 23 1764 1784 1763 1784 0.91

13 13 0.0016 0.15 13.7 5.7 1 23 1790 1812 1790 1812 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.031	3	9.6	1.7	1	21	236	256	236	258	0.95
2	13	0.00053	0.05	15.1	0.2	1	23	268	290	268	290	0.98
3	13	3.7e-05	0.0035	18.8	7.5	1	23	296	318	296	318	0.98
4	13	6.3	6e+02	2.3	0.4	3	23	548	570	547	570	0.88
5	13	0.17	17	7.2	4.4	2	21	576	595	575	596	0.93
6	13	0.06	5.7	8.7	0.1	1	23	736	758	736	758	0.97
7	13	1.8e-05	0.0017	19.8	1.2	1	23	768	790	768	790	0.99
8	13	0.0013	0.12	13.9	2.0	1	23	796	819	796	819	0.97
9	13	0.0047	0.45	12.2	2.0	1	23	1174	1197	1174	1197	0.95
10	13	0.00029	0.027	16.0	1.0	3	23	1538	1558	1536	1558	0.97
11	13	0.23	22	6.9	6.3	1	23	1564	1587	1564	1587	0.97
12	13	0.13	13	7.6	1.1	3	23	1764	1784	1763	1784	0.91
13	13	0.0016	0.15	13.7	5.7	1	23	1790	1812	1790	1812	0.99

Sequence Information

Coding Sequence: atGTTAGTCGCCACAAATAACCCACAAACTGCCCAACAAAATAGTCCCAAAAATACCAGAGCTAATACACCCATTAAAATGGAAAGAAGAGATTCTTCTTCATCTTATTCATCTTTGGAAGATTTGGAACATGaaggtaaaaaattaaatgccgTTACCTCAACACCGGTGGTTACCAGTGATGCCACCATTTCGTGCGCTGTTAATTCTATAACAAATGCAAGTATGAGATCATCACAGAGGCCGGATACAACAGAACAACAGCATCATAGCCTGCAGCAACGTATGCAGGAATCCGATGAGGCTAATGACTACGATGAGGATGAATCGGCTGATGAGAAATCTTCACAACCACGTCAGCTTTTACACTACAAGCGTCGTTTGAGTGGTCGTAGTCTAGCGGATAAAACAGCCAGTGTTTTATTGGAATATAATGCTGATAATCCTAATTCTTTGcgcaaaaaattccgttttaaTCGTTTTGTCCAAAACAATGGCGATGAATCGGGTTTCGTAGATGCCAGCAACAATAGCCAAACGACCATGAATACATCTACGTCTTTGTTGGGCGGCAGTAATACACAACAAACAAATTCGAATAATAATGTTTCAAAATCAAATAGTTCTTCGGATACCTCTTCACCACCTCAAAGTAATGGTAATTCTAGTCCTGAATCGGGTATAGGAGAGCGAGAGGATATGAAATATATGTGTCCCATCTGTGATGCAGTCTCACAAACCGCCCATCAATTTACAAATCATATACGTTGTCACAATTATGCCTCGGGTCATACGGAGAATTTTACCTGCCGTATATGCTCTAAGGTGCTCTCATCTGCCTCATCATTGGATCGTCATGTTCTAGTGCATACGGGAGAAAGACCATTCAATTGTAAATATTGTCATCTCACATTTACCACAAATGGAAATATGCATCGTCATATGCGTACCCATAAACAGCATCAGCATACTCATCATCGTCGTAACTCGAATGGAACAAAGTTCAACTcaaacagcaacaataacaacaacagtagtagtaataataattttaatagcagtagtagtaataataacaacacaacaacaataacaactcCAACGACAACAACAATATCAGCTATAAGTAAAACAACATTAAGCAATGGACAATTAAATGAAGGCGTTAAATTATCAACAACACAAGCAGCAGATACCACAACTTCAAACTCAACGCTAACAACAACAGccaacacaacaacaaccaacTCAACAACTGCCAACATCatcaacaataataacaaaccATCTGACAATGATTGTAATCAAAAGTCAACAGGTGCTAATGGTAAACGATTAAATGGTAACGCCAACTTAGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGATTCATCAGCAGGTCGTATttccaacaacaacaataataatgataaccaaaataacaacaacaacaataataataatgatttaaaaattaacaataataacTATAAACGTAAACATAGTGAAGATGATCATAACTCACAAGATCAAGTCGATTCAGGTGAAAATCATCATGAACTTCTAAAGAGATGTTTAAGAGCAGAAAATATTAATTCTAACGATCATCATAATAATACCACAAGTGATGAAGTAATTTGTCCCGTTTGTAATGATAGTGATTTTGCCAATAATCATGAACTTGATCAACATATGGACAATAAACATCCTGAAATAATGGTTAAATGTAAACATTGTGGTGTTTATTTTCGCAGTCATCAACAACTTAGCTTACATTATTGTTCCGCCGATGTTAAGGGTTCTGTTAATTTAAGCATTAAGCAGAGACGTTTAAGTGAAACATCTTACCAACCCAAGACCATAGAAGATTCGGAGGAACAAGACGATCATTTGAGTAAAAGTCATGAActttttcaacattttaaaaatgccATGACTTCGAATAACTCCTGCTCATCGCAATTCAATCAAGATCTTACTGAGGATGATATTAAATCAGAACCTTCAGCTCATGATTCCAAAGATTTGGCCGACATACAATCGATTTTGAATATGACTGCTTCATCGAGCAACTCAAATTTACTGCGTAATTTTGAACAATCAGTCAATACACCTTCTTCACAGTACAGTTATGATCGGGATGAAGAAGAAGCTCAAGATGCTTTTACCTCAGAATTCCGTAAAATGAAATTGCGTGGTGAGTTCCCCTGCAAGCTGTGTACCGCAGTATATCCCAATTTACGTGCTCTAAAAGGCCATAATCGTGTGCATTTGAGTGAGGCTGGTCCCGCTGGACCCTTCCGTTGCAATATGTGTCCTTATTCGATATGTGATAAGGCCGCTCTCATACGTCATATGCGTACACATAATGGTGATCGTCCCTATGAGTGTGCTGTATGCAATTATGCCTTTACCACCAAAGCCAACTGTGAAAGACATTTACGTAATCGTCATGCCAAAACTACTAGAGAAGAAGTTAAACGTGCCATAATATATCATCCTTCAGAGGATTCATCTTGTGATGATACAAGCAAAAAATTGCATATGTTTTCATCGGAATTGGAAGATGATTGTGATTTAATGTCTTATCATCAACACCAGCCCAAAGATCGTTCCACTCCCGTATCTCATCTCAAAGAAAGATTGATTTCAGGTGATAGTCCATCGTCGAAACCTGTAAAGATCCAAGTAAAAAATCTAGAAGAATTATTAGATAAATCAACAGCTTCATCGGGTTATCATGATAGTTATGATAAACGTAACATAGATACTTCTCAAGCTCCCATTGATATGAGTATGGATGTTTTGGATTTGAGTAAGAAACCTAGTGCTAGTGCTCCAGCTCCAGTGCAAGAAGAAAAGTTAGAAACAGCTATACCTTTGTTATCCTTACCTAAACCAGCCGTTGCTctgaataatgaaataaatcccagCAAAATCTTACCCACAGAAGTAGATCCAAAATTGGATATCTCTGCTTTGGataagcaacaacaacaaatacttTTAGCTCAGCAACAATTGCTCAGTGATCCAAATCAATTAATGCAACAATTGTATCGTAACCTCTTGTTTCCTCAATTCCCGCCCTTCTTTATGCCCAACACTTTTATGAATACAAACTTTAGTGATTTTCAAAAACTTGCTCCTCTACTAACACGTATGATGGGTGGAGTTGCTGCGGCTGCCTCAATGCCAAATAACGATATTGAAAAGCCTTCTACCTTAACTACACCTCTTAATCCTAATAACTCTCCCAGCCTATCACAAATGAGTCCTTTAATGTCTGAAAAATCGAATTCGGCAGCAATGGCTTCAATGTCATCACCCAAAAATCTGCTTTCACCAAATCCAAATCATTTATCTATGCCTAGACATATGATGGGCGCTACTGCTCCTTCACATCCTGCAAATCTACCACCAACAATGCTTTCAAATGGTCCCGTCAAAATGGTGCTCAAGAATGGTGTATTCAtgccaaaacaaaaacaaagacgTTATCGCACTGAACGCCCTTTTGCCTGTGAACATTGTTCAGCTCGTTTTACTTTACGCTCCAATATGGAACGTCATGTCAAACAACAACATCCCCAGTTCTATGCTCAACGTCAACGTAGTGGTCATCATGTTATGCGCGGTCGGGGAGCCAGCAGTGCTGCTAATATGAATAGCATCTCACATTTGCAAGCAGCTATGGGTCAGACTCATTATGGTTCTACGCCCAATTCGATGAGTTCCCATTCTCCCATTTCGGATCAGGTTAAATGTGCCATACTCGCACAACAACTTAAGGCACGCAAAGACACTGATCTGCTACAACAAGCCCTGGCTCATGGTTCTAACAGTGTAACCAATGCAAATATGTTTTCACAACAAGCAGCCAATCTCAGCAATGGACAAACACCTTTTTTCGGCTTTAATCCTCATCATGGCCACCATCTAAGCCAAAATGGTACCCCCAATGGTTCTATGGAAGATGATGAACCCAAATTAATAATCGATGAAGATGACGAAGAGGAGGAAGAAGATGAAGAAGATATTGAAGAAATTCCCGACGATCATGAAGAAGACGAAGATCATGATGTGGTGATAACTGAAAATCAAGATAAGTTGGAGGCAGAACATTTACCCACCACTGTTGAAGAAGTTAAACTCAAGTCTGAAGAACCCCAAGAATCGGCTAAGAAAGTGGCTGAATCAATATTGGAACAAGCCATTAAAGCTAGACAAAATATAAGTTCCTTTAATAAAACTGCAACTGAACCGGCTGCTCCCGCAACTTCTAACAATAATACCATGAAATCCATGATTGCTCAAGCACCTGCAGTgggtaaatttttaaaagaagtaGCAAGTTCTTCATTTAAAGACGAATCCCAAGATTTAGTATCAGTATCCGAGTTAGTTGATAATGCCACCAATAATGCAGTATCATTCAATAACTATTTCCGCCCTTCAGATGTGGCCAATCATATGGAGCCCAGCGATGAAGATGGCTTAGTGGCTTCCTCGGCCAGTGAAAGTAACAATTCAGGAGCCGAAGATACTGTAAGTACtgaaaaacctaaaaagaaATCTGCCTACAGTTTGGCACCCAATCGTGTGCACTGTCCCTATTGTCAACGCATGTTCCCCTGGTCCAGTTCCTTAAGAAGACACATACTCACCCATACGGGACAAAAACCCTTCAAATGTTCACATTGTCCTCTTTTATTCACCACCAAAAGCAATTGTGATCGTCATCTTTTGCGCAAACACGGAGATGTAGAATCAGCTGTATCGGTATATGTACCAACCGAAGATGTTTCTGAACCTATACCTTTGCCCAAATCCGTAGAAGAGATAGAGCGCATGCAGAGAGAACGTGAAGAAGAAGAGCGCAAACGTAAAGCCGAAGAACAAAGAGAGCGTTTGGAAAAAGAGcaaatggaaaagcaaaaatTTGAACAGGAACAGCAACAGAAACAAGCTTTCTTAAAGCACTTAGCTGTAGCACAATTTCAACAACAATTCAGCCAAAAACCCGAAGCTAATCCAGTATCTTCTTCAGAATTACCCTTTAAGTGTCACTTGTGTGAAAGTTCATTTGCTGAACGTCTACAATGTTTGGAACATATTAAATCTTTACATGCCCAAGAGTTTGCCCTACTGCTATCAAAGGGAGCCATAGAAAATGAAACTGAATCAGCCCAAATGACCTCAAACGAAGAAGATGAACGCCAGCGTTCTAACGAAGATGCTGGCAAAGGTGGCAAATATCCTGACTATAGTAATCGTAAAGTCATTTGTGCTTTTTGTATGAGACGTTTCTGGTCAACCGAAGATCTACGCCGTCATATGCGTACCCACTCTGGCGAAAGACCTTTCCAATGTGAAATTTGCTTTAGAAAATTCACTCTTAAACACAGTATGCTAAGACACATGAAGAAACACAATGGCCTTCACATGAACGGCAGTCAATCAAATAGTGACAACTTAACCAATGGCAATTCTGGCTCTGATTATTCCGATGATGAACAAAGTCCAAACTCATTGCCTGCACCAGCCATGCCCCTACCCAGTGCCAGCATTAATGCATTATTTATGGGTTCAAAAATCCAAGAACTATTGAACAAAGCAAATGAATGGAGAAATGGTAATTTGAATGCAATGCGAGATGGTAAAGAAAACAATTCAGAGGAAACAAATACACCACAATCATCAGATTTAATTGGCAACTTATTGGGTATCAGTGATCAgggtattttaaataaattgatgtCATCACCAGATGAAGCTGCCAAATTTTTGGGTGttgaaaagtaa
Protein Sequence: MLVATNNPQTAQQNSPKNTRANTPIKMERRDSSSSYSSLEDLEHEGKKLNAVTSTPVVTSDATISCAVNSITNASMRSSQRPDTTEQQHHSLQQRMQESDEANDYDEDESADEKSSQPRQLLHYKRRLSGRSLADKTASVLLEYNADNPNSLRKKFRFNRFVQNNGDESGFVDASNNSQTTMNTSTSLLGGSNTQQTNSNNNVSKSNSSSDTSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSNSNNNNNSSSNNNFNSSSSNNNNTTTITTPTTTTISAISKTTLSNGQLNEGVKLSTTQAADTTTSNSTLTTTANTTTTNSTTANIINNNNKPSDNDCNQKSTGANGKRLNGNANLESYESDGGCSSDSSAGRISNNNNNNDNQNNNNNNNNNDLKINNNNYKRKHSEDDHNSQDQVDSGENHHELLKRCLRAENINSNDHHNNTTSDEVICPVCNDSDFANNHELDQHMDNKHPEIMVKCKHCGVYFRSHQQLSLHYCSADVKGSVNLSIKQRRLSETSYQPKTIEDSEEQDDHLSKSHELFQHFKNAMTSNNSCSSQFNQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCDDTSKKLHMFSSELEDDCDLMSYHQHQPKDRSTPVSHLKERLISGDSPSSKPVKIQVKNLEELLDKSTASSGYHDSYDKRNIDTSQAPIDMSMDVLDLSKKPSASAPAPVQEEKLETAIPLLSLPKPAVALNNEINPSKILPTEVDPKLDISALDKQQQQILLAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNTNFSDFQKLAPLLTRMMGGVAAAASMPNNDIEKPSTLTTPLNPNNSPSLSQMSPLMSEKSNSAAMASMSSPKNLLSPNPNHLSMPRHMMGATAPSHPANLPPTMLSNGPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAANMNSISHLQAAMGQTHYGSTPNSMSSHSPISDQVKCAILAQQLKARKDTDLLQQALAHGSNSVTNANMFSQQAANLSNGQTPFFGFNPHHGHHLSQNGTPNGSMEDDEPKLIIDEDDEEEEEDEEDIEEIPDDHEEDEDHDVVITENQDKLEAEHLPTTVEEVKLKSEEPQESAKKVAESILEQAIKARQNISSFNKTATEPAAPATSNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNAVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTVSTEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQREREEEERKRKAEEQRERLEKEQMEKQKFEQEQQQKQAFLKHLAVAQFQQQFSQKPEANPVSSSELPFKCHLCESSFAERLQCLEHIKSLHAQEFALLLSKGAIENETESAQMTSNEEDERQRSNEDAGKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHMNGSQSNSDNLTNGNSGSDYSDDEQSPNSLPAPAMPLPSASINALFMGSKIQELLNKANEWRNGNLNAMRDGKENNSEETNTPQSSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260066;
90% Identity: iTF_01259500;
80% Identity: -