Pame028144.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
RREB1
Assembly
GCA_943735935.1
Location
CALSEV010000505.1:383510-389602[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.029 3.2 9.6 1.7 1 21 231 251 231 253 0.95
2 13 0.00049 0.055 15.2 0.2 1 23 263 285 263 285 0.98
3 13 3.4e-05 0.0039 18.8 7.5 1 23 291 313 291 313 0.98
4 13 4.4 5e+02 2.7 0.0 1 23 526 550 526 550 0.82
5 13 5.9 6.7e+02 2.3 3.1 2 20 556 574 556 575 0.93
6 13 0.055 6.3 8.7 0.1 1 23 715 737 715 737 0.97
7 13 1.7e-05 0.0019 19.8 1.2 1 23 747 769 747 769 0.99
8 13 0.0012 0.14 13.9 2.0 1 23 775 798 775 798 0.97
9 13 0.0043 0.49 12.2 2.0 1 23 1150 1173 1150 1173 0.95
10 13 0.00026 0.03 16.0 1.0 3 23 1511 1531 1509 1531 0.97
11 13 0.21 24 6.9 6.3 1 23 1537 1560 1537 1560 0.97
12 13 0.12 14 7.6 1.1 3 23 1737 1757 1736 1757 0.91
13 13 0.0014 0.16 13.7 5.7 1 23 1763 1785 1763 1785 0.99

Sequence Information

Coding Sequence
ATGTTAGTCGCAACAAATGCCCAACAACCTGCCCAAAATAGTCCCAAAGCCACAAGAGCTAATACACCTATTAAAATGGAAAGAAGAGATTCCACTTCATCATATTCCTCATTGGAAGACTTGGAACACAATGGTAAGAAATTAAATGCTGTAACCTCTACACCGCTAGTGACAAGTGATGCAACAGTTTCTTGTGGTTTGAGTTCTATAACTGGTGCAACAGAACGATCGATTCAGAGGCCGGCAACAATAATTCAGCAACATATTTTGCATCAACGTATGCAGGAATCTGATGAGACTAACGATTATGATGAAGACGAATCGGCGGATGAGAAATCGTTACAATCTCGCCAGCAATTGCACTATAAGCGTCGTCTAAGCGGCCGCAGCCTTGCGGATAAAGCAACTAGCTATTTAATAGAATATAATGCTAATAATCCAAATAGTTTGCGCAAGAAATTTCGTTCAAATCGCTTAGTGCTTAACAATGGCGATGAATCGGGTTTCGTTGATACCAGCCACAACAGTCAATTGACGAATACCACAACATCTACCTCTTTGGCTGCTGGAGCAACAAATCTACCAAGCTCAAATAATAAAACAAATAGTTCTTCGGATACCTCTTCGCCGCCACAAAGCAATGGTAACTCAAGTCCCGAATCGGGTATTGGAGAACGGGAGGATATGAAATATATGTGTCCCATATGTGACGCAGTTTCACAGACGGCCCATCAATTTACCAACCATATACGTTGTCACAACTACGCCTCAGGTCATACGGAGAATTTTACCTGCCGTATATGCTCTAAGGTGTTATCATCTGCCTCATCATTGGATCGCCATGTTCTAGTTCATACGGGAGAACGACCATTTAATTGTAAATATTGTCATCTCACGTTTACcaccaatggaaatatgcatcgtcatatgcgtacccacaaacagcatcagcatactcatcatagacgtaactcgaatggaacaaagttcaactcaaacaacaataacaacaataattatagcagtagtaataacaacagcacaaccacaccagctgtaaataaatcgacattaagcaatggacaattaagtgaaggcgttaaattatcaacaacagcagacacaacgccgacaacgacaacaacaacaacagtaataccaacatcgccagcagcagcgacaccaaaagcagttgacgctactgacaatgataataaTCAAAAGCCAACAACAGGTGCTAATAGCGAACGATTAAATGGTAACGCCAACTTAGAAAGCTATGAAAGCGATGTTGGCTGCTCATCAGATTCATCAGCGGGTCGTGTTTATAACAACAACAGAAACCACAGCAATAATGACAAACAAAATGAAAATAATAACAATAATGATTTGAAAATTAACAATAATAACTATAAACGCAAACATAGTGATGATCAACCATCTCAAAACGTACTTGATTCTGTAGAAAGCACCCATGATCTACTCAAGCGTCGTTTAAGACCAGACTCTAGTAAGTCACCCAACAGCACAACAAATAACCATAACGATATGTTGAATACAACAACAAGAGAGTCATTCATTTGTCCCGTTTGCAACGAAAGTGATTTTCCGGATAATCAGGCACTGGATCAGCACATCGATAGCAAGCATCCAAAAATTCCTGCCAAGTGTAAACATTGTGGTGTGATTTATCTAACCCAACATCAGTTTAATATACACGTCTGTCCTGCCGATATCAAGGGTTCCATAAATTTGTCGGTAAAACAGCGTCGTTTAAGTGAAAATGCCAATCACCACGTGGAAGAATCCCGTGAGGACTTAGAAGACAATGTTAGGCAAAGACATGAATTATTTCAACATTTTAAAAATGTTATAGCCCAAAGCAATTCCCCTTCATCACATTTCAATCAAGATCTCACAGAAGATGATATTAAATCAGAACCATCAGCTCATGACTCCAAGGATTTGGCTGATATACAATCAATTTTAAATATGACAGCTTCTTCGAGTAATTCAAATTTACTCCGGAACTTTGAACAATCTGTAAATACACCTTCCTCTCAGTACAGCTATGACAGGGATGAAGAAGAAGCTCAAGATGCTTTCACTTCAGAATTCCGTAAAATGAAATTACGTGGTGAATTTCCCTGTAAACTCTGTACAGCAGTATATCCTAATTTACGAGCTCTCAAAGGCCATAATCGTGTTCATTTAAGTGAGGTCGGTCCAGCAGGTCCTTTCCGTTGCAACATGTGTCCTTACTCGATATGTGACAAAGCGGCCCTAATTCGCCATATGCGTACTCACAATGGTGATCGTCCCTACGAGTGCGCCGTTTGCAATTATGCCTTTACCACCAAAGCTAATTGTGAAAGACATTTGCGCAATCGTCATGCAAAAACAACTCGGGAGGAGGTAAAACGTGCCATTATTTATCATCCTTCGGAAGATTCATCCTGTGAAGATACTACCAAAAAGTTGCATATGTTATCATCCGAATTGGAAGAAGATTGTGATTTAATGTCATATCACCAACATCAACCCAAAGATCGGTCAACTCCCGTATCACATCTCAAAGAGAGATTAACTTCTGGCGATAGTCCATCTTCCAAGCCTGTTAAGATTCAAGTAAAAAACCTTGAAGATTTGTTGGATAAATCAACTGCTTCATCCGGTTATCATGATAGCTACGATAAACGTAATATTGATAACTCCGAAGCCCCAATTGATATGAGCATGGATGTTTTGGACTTAAGTAAGAAACCTAGCGTTCCACAGCCTCCAGTTCAAGAAGAAAAGGTGGAATCAGCCCCGCCATTGCTACCACTACCCAAACCAGATGCTAACCTAAGCAATGAAATGCTCAAAAACAAAACAACTCCTACGGAGACGGATCCAAAATTAGATATAACAGCTTTGGATAAACAACACCAACAATTGCTTTTGGCTCAGCAACAACTACTCAGTGATCCAAACCAATTAATGCAGCAATTGTATAGAAATTTATTGTTTCCTCAATTTCCTCCCTTCTTTATGCCCAATACTTTTATGAATACTAACTTTGCAGATTTTCAAAAAATCGCTCCTCTTCTGACTCGTATGATGGGTGGAGTTGCAGCTGCAACATTGCCAAACAACGATATTGAAAAACCATCTACAATACCGCCTTTGAATCCTAATAGCACCCCCAGTGTCCCACAAATGAGCCCTTTAATAAATGAAAAACCTAACTCTACAACGTTGGCTTCAATGTCATCACCAAAAAATCTAATTTCGCCAAATCCAAATCATTTGCCAATGCCTAGACATATGATGCCCACTTCAGCATCATCACATTCTCCAAATCTGCCACCAACAATGCTTTCGAATGGTCCTGTCAAGATGGTGCTCAAAAACGGTGTATTCATGCCCAAGCAAAAACAAAGACGTTACCGTACTGAACGTCCATTTGCTTGTGAACATTGTTCAGCCCGTTTCACTTTACGTTCCAATATGGAACGTCATGTAAAGCAACAACATCCCCAGTTCTACGCCCAACGTCAGCGTAGTGGACATCATGTTATGCGTGGCCGGGGAGCCAGTAGTGCTGCTAATATAAATAGCATCTCCCATTTGCAAGCTGTAGCCCAAGCTCATTATGGTTCTGCCCCACCCACGATAAGTTCACATTCTCCTATTTCTGATCAGGTGAAATGTGCCATATTGGCACAACAACTAAAAGCTCGCAAAGACACCGATCTGCTGCAACAAGCCTTAGCACATGGTTCCAACAGTGTAACCAATTCAACTATGTTTTCTCCACAAGTTTCTAATCTTAGCAATGGACAAACACCTTTTTTTGGTTTCAACCCCCATCATAGTCATCACCTAAGTCAAAACGGCACACCAAATGGTTCCATGGAAGATGATGAACCAAAATTAATCATTGACGAAGATGATGAGGAAGAAGAAGAGGATGAAGAGGACATTGAAGAAATTCCCGATGAACAGGAAGAAGATGAAGAACATGATTTGATTTTAAATGAAAGCCAGTATAAATCGGAAAGCCATAATTTACCCACAACTGTTGAAGAAGTTAAGCTTAAGTCAGAAAAACCACAGGAGTCAGCCAAAAAAGTAGCTGAATCAATATTGGAACAAGCGATTAAAGCCAGGCACAATGTGAGTTCTTTTGCTAAAGCATCAGAACCTTCTATGGCAACCCCCAATAATAACACTATGAAATCCATGATTGCTCAAGCTCCAGCTGTGGGTAAATTTTTGAAAGAAGTGGCAAGTTCTTCATTCAAGGATGAGTCCCAAGACTTGGTCTCAGTCTCTGAATTAGTTGATAATGCCACTAATAATGCGGTGTCTTTTAACAACTACTTCCGCCCCTCGGATGTTGCTAATCATATGGAACCCAGTGATGAAGATGGTTTGGTGGCCTCCTCTGCCAGTGAAAGTAACAATTCGGGAGCGGAAGATACTGTGAGTATTGAAAAACCAAAAAAGAAGTCAGCCTATAGTTTAGCACCCAATCGAGTTCATTGCCCTTATTGTCAACGTATGTTTCCTTGGTCCAGCTCCTTAAGAAGACATATTCTAACACATACTGGACAAAAACCGTTTAAGTGCTCTCACTGCCCGCTTTTGTTTACCACTAAAAGTAATTGTGATCGTCATCTTTTGCGCAAACATGGAGATGTAGAATCTGCTGTGTCTGTGTATGTACCAACTGAAGATGTTTCCGAGCCTATTCCACTGCCTAAGTCGGTGGAAGAAATTGAAAGGATGCAGAGAGAGCGTGAAGAAGAAGAACGTAAACGTAAGGCCGAAGAACAGCGAGAACGTTTGGAGAAAGAACAAATGGAAAAGAAAAAATTTGAACAGGAACAACAACAAAAACAAGCATTTCTTAAGCAATTAGCTGTAGCTCAATTTCAACAGCAATTTATACAAAAGCCCGAGGCTAATCTAGTATCTTCTTCAGAACTACCTTTCAAATGTCATCTTTGCGAAAGTTCATTTGCTGAGCGTCTACAATGTTTAGAACACATTAAATCTTTGCATGCCCAAGAATTTGCTCTCTTGCTATCGAAAGGAGCAATCGAAAATGAGACTGACGCTGCTCAAATGACTTCCAATGAAGAAGATGAACGCCATCGGTCTACTGAAGATTCTGCCAAAGGAGGCAAGTATCCTGACTATAGTAATCGTAAAGTCATCTGTGCTTTTTGTATGAGACGTTTCTGGTCGACTGAAGATCTGCGGAGACATATGCGTACCCATTCCGGCGAAAGACCTTTTCAGTGTGAAATCTGCTTTAGAAAATTTACTCTAAAACATAGCATGCTTAGACACATGAAAAAACACAATGGTCTCCACATTAACGGTACTCAATCCAACAATGACAATATGACCAATGGCAATTCTGGATCTGATTATTCGGACGATGAACAAACTCCAAATTCCTTGCCTCCTCCTGCAATGCCAATGCCAAACCCTGGCATTGATGCTTTATTTATGGGCTCAAAATTTCAAGAATTACTAAACAAAGCTAACGAATGGAGAAATGGCAGCTTTAATGCATTAAGGGAGGGCAAAGAAAACAAGTCAGAGGAAACAAATACACCACAATCATCGGATTTAATTGGCAACTTGTTGGGCATCAGTGATCAGGGTATATTGAATAAATTAATGTCATCACCTGATGAGGCAGCCAAATTTTTGGGAGTTGAAAAATGA
Protein Sequence
MLVATNAQQPAQNSPKATRANTPIKMERRDSTSSYSSLEDLEHNGKKLNAVTSTPLVTSDATVSCGLSSITGATERSIQRPATIIQQHILHQRMQESDETNDYDEDESADEKSLQSRQQLHYKRRLSGRSLADKATSYLIEYNANNPNSLRKKFRSNRLVLNNGDESGFVDTSHNSQLTNTTTSTSLAAGATNLPSSNNKTNSSSDTSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSNNNNNNNYSSSNNNSTTTPAVNKSTLSNGQLSEGVKLSTTADTTPTTTTTTTVIPTSPAAATPKAVDATDNDNNQKPTTGANSERLNGNANLESYESDVGCSSDSSAGRVYNNNRNHSNNDKQNENNNNNDLKINNNNYKRKHSDDQPSQNVLDSVESTHDLLKRRLRPDSSKSPNSTTNNHNDMLNTTTRESFICPVCNESDFPDNQALDQHIDSKHPKIPAKCKHCGVIYLTQHQFNIHVCPADIKGSINLSVKQRRLSENANHHVEESREDLEDNVRQRHELFQHFKNVIAQSNSPSSHFNQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVYPNLRALKGHNRVHLSEVGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCEDTTKKLHMLSSELEEDCDLMSYHQHQPKDRSTPVSHLKERLTSGDSPSSKPVKIQVKNLEDLLDKSTASSGYHDSYDKRNIDNSEAPIDMSMDVLDLSKKPSVPQPPVQEEKVESAPPLLPLPKPDANLSNEMLKNKTTPTETDPKLDITALDKQHQQLLLAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNTNFADFQKIAPLLTRMMGGVAAATLPNNDIEKPSTIPPLNPNSTPSVPQMSPLINEKPNSTTLASMSSPKNLISPNPNHLPMPRHMMPTSASSHSPNLPPTMLSNGPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAANINSISHLQAVAQAHYGSAPPTISSHSPISDQVKCAILAQQLKARKDTDLLQQALAHGSNSVTNSTMFSPQVSNLSNGQTPFFGFNPHHSHHLSQNGTPNGSMEDDEPKLIIDEDDEEEEEDEEDIEEIPDEQEEDEEHDLILNESQYKSESHNLPTTVEEVKLKSEKPQESAKKVAESILEQAIKARHNVSSFAKASEPSMATPNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNAVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTVSIEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQREREEEERKRKAEEQRERLEKEQMEKKKFEQEQQQKQAFLKQLAVAQFQQQFIQKPEANLVSSSELPFKCHLCESSFAERLQCLEHIKSLHAQEFALLLSKGAIENETDAAQMTSNEEDERHRSTEDSAKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHINGTQSNNDNMTNGNSGSDYSDDEQTPNSLPPPAMPMPNPGIDALFMGSKFQELLNKANEWRNGSFNALREGKENKSEETNTPQSSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00260066;
90% Identity
iTF_01238015;
80% Identity
-