Basic Information

Insect: Aldrichina grahami
Gene Symbol: RREB1
Assembly: None
Location: Contig14:396879-408468[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.023 0.94 9.6 1.7 1 21 232 252 232 254 0.95

2 14 0.00039 0.016 15.2 0.2 1 23 264 286 264 286 0.98

3 14 2.7e-05 0.0011 18.8 7.5 1 23 292 314 292 314 0.98

4 14 2.6 1e+02 3.2 0.1 2 23 528 551 527 551 0.92

5 14 0.32 13 6.0 4.0 2 19 557 574 557 574 0.98

6 14 0.023 0.93 9.6 0.0 1 23 716 738 716 738 0.97

7 14 1.3e-05 0.00054 19.8 1.2 1 23 748 770 748 770 0.99

8 14 0.00097 0.04 13.9 2.0 1 23 776 799 776 799 0.97

9 14 0.0035 0.14 12.2 2.0 1 23 1151 1174 1151 1174 0.95

10 14 0.00021 0.0086 16.0 1.0 3 23 1513 1533 1511 1533 0.97

11 14 0.17 6.9 6.9 6.3 1 23 1539 1562 1539 1562 0.97

12 14 5 2.1e+02 2.2 3.9 1 23 1663 1686 1663 1686 0.92

13 14 0.099 4 7.6 1.1 3 23 1739 1759 1738 1759 0.91

14 14 0.0012 0.047 13.7 5.7 1 23 1765 1787 1765 1787 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.023	0.94	9.6	1.7	1	21	232	252	232	254	0.95
2	14	0.00039	0.016	15.2	0.2	1	23	264	286	264	286	0.98
3	14	2.7e-05	0.0011	18.8	7.5	1	23	292	314	292	314	0.98
4	14	2.6	1e+02	3.2	0.1	2	23	528	551	527	551	0.92
5	14	0.32	13	6.0	4.0	2	19	557	574	557	574	0.98
6	14	0.023	0.93	9.6	0.0	1	23	716	738	716	738	0.97
7	14	1.3e-05	0.00054	19.8	1.2	1	23	748	770	748	770	0.99
8	14	0.00097	0.04	13.9	2.0	1	23	776	799	776	799	0.97
9	14	0.0035	0.14	12.2	2.0	1	23	1151	1174	1151	1174	0.95
10	14	0.00021	0.0086	16.0	1.0	3	23	1513	1533	1511	1533	0.97
11	14	0.17	6.9	6.9	6.3	1	23	1539	1562	1539	1562	0.97
12	14	5	2.1e+02	2.2	3.9	1	23	1663	1686	1663	1686	0.92
13	14	0.099	4	7.6	1.1	3	23	1739	1759	1738	1759	0.91
14	14	0.0012	0.047	13.7	5.7	1	23	1765	1787	1765	1787	0.99

Sequence Information

Coding Sequence: ATGTTAGTAGCCACAAATGCCCAACAAACTGCCCAAAACAGCCCTAAAACCACTAGAGCTAACACGCCTATTAAGATGGAAAGAAGAGATTCATCCTCCTCCTACTCGTCATTGGAAGATTTGGAGCAAGAAGGTAAAAAATTAAATGCTGTAACCTCTACGCCGGTGGTGACAAGTGATGCCACTGTTTCTTGCGCTGTTAGTTCCTTAACAAGTTCAACTATAAGATCAAATCAAAGAACGGACTTGGAGGGTCAACAGCTTAGCCTGCATCAGCGGATGCAAGAGTCTGACGATGCTAATGACTACGATGAAGACGAATCGGCTGATGAGAAATCTTCACAGCCACGTCAGCAGTTGCATTACAAGCGACGTCTGAGCGGTCGCAGCCTCACGGATAAAACAGCCAGTGTTCTTCTAGAGTACAATGCTGATAATCCCAATTCTTTGCGCAAGAAATTCCGCTTCAACCGCATTGTCATGAGCAATCGCGATGAGTCGGGTTTCGTTGATACCAGCAACAATAGCCAGTTGATGAATACATCATCCTCAACGTTGGCAGTTGCCGCAACAAATCTATCCAACTCGAATAATGTTGCAAAATCAAACAGTTCTTCGGACACCTCATCGCCGCCCCAAAGCAATGGCAATTCTAGTCCCGAATCGGGCATCGGAGAGCGTGAGGATATGAAATATATGTGTCCCATCTGTGATGCAGTCTCACAAACGGCCCATCAATTCACCAATCATATACGTTGTCACAATTACGCCTCAGGTCATACGGAGAACTTTACCTGCCGTATTTGCTCTAAGGTGCTCTCATCTGCCTCATCATTGGATCGCCATGTTCTAGTGCATACGGGAGAACGGCCATTCAATTGTAAATATTGTCATCTCACATTTACCACAAACGGGAATATGCATCGTCATATGCGTACCCATAAGCAGCATCAGCATACTCATCATCGACGCAACTCGAATGGAACAAAGTTCAACTCAAACAATAACAATAATTATAATAGTAACAACACAACATCAACAACGACTCCAGCTGTAAGTAAAACAACATTAAGCAATGGACAATTAAGTGAAGGCGTTAAATTATCAACAACAGCAGCAGACACAACGACGTCGGCAACACCAATAGCAACGCCATTATCACCAGCAGTAGCAGAAACAAGCGCTGTCTTCGCTGCTGACAATGATGATAATCAAAAGGCAACAGGTGCTAATGGCAAACAATTAAATGGTAACGCCAACTTAGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGACTCGTCAACAGGCCATGTTTGCAACAATACTAATAATAACAATAACAACAATGATAATGACAACCAAAATAATAACAACAATAATGATTTAAAAATTAACAATAATAACTATAAACGTAAACACAGTGAAGATCAGCAGCCTCAAGACCTAGTGGATTCTATAGATAACACTCATGATCTACTAAAACGAAGATTGAGACCAGACATCAACAACACCGCCTCACCTATCAACTCCCATGATAACCATAACGACCTGGTAAGCAGAATAACCCGTGAATCTGTTGTTTGTCCTGTTTGCAACGATACAGATTTTACGGATAATCTGGCGCTTGATCAGCATATGGATAATAAACATCCGGAAATACCAGCCAAATGTAAACACTGTGATGTTTTGTTTCGCACACATCATCAGCTCAACATACATCCCTGCTCGGCCGATATTAAGGGGTCTATTAATTTATCAGTTAAGCATCGTCGTTTGAGTGAAAGTTCAAATCATCATGGGGAAGAAGATCGTGAGGAAGCGGATGATCATGTAAGGCAACGACATGAACTATTTCAACACTTTAAGAATGCCATGGCTCACAGCAATTCACATTCCTCGCATTTTAATCAAGATCTCACTGAGGATGACATCAAATCGGAACCATCGGCTCATGACTCCAAAGATTTGGCTGATATTCAATCGATTTTGAATATGACAGCATCGTCAAGTAATTCGAATTTACTGAGGAACTTTGAACAATCGGTAAATACACCTTCATCGCAATACAGCTATGACAGAGATGAAGAGGAAGCTCAAGATGCTTTCACCTCGGAATTCCGTAAAATGAAGTTGCGTGGTGAATTTCCTTGCAAGTTGTGTCCCGCAGTGTATCCCAATTTACGAGCTCTGAAAGGTCATAATCGTGTGCATTTGAGTGAGGCTGGTCCCGCAGGTCCCTTCCGTTGCAACATGTGTCCCTATTCGATATGTGACAAGGCCGCCTTGATTCGTCATATGCGTACCCATAATGGCGATCGTCCTTATGAGTGTGCTGTGTGCAATTATGCCTTTACCACGAAAGCCAATTGTGAAAGACATTTGCGCAATCGCCATGCTAAAACCACTCGCGAGGAAGTTAAACGTGCCATTATTTACCACCCTTCAGAAGATTCATCCTGCGAAGATACTACCAAAAAGTTGCATATGTTTTCATCCGAGTTGGAAGATGATTGTGATTTAATGTCGTACCATCAACATCAGCCCAAAGATCGTTCAACTCCTGTGTCTCATCTCAAGGAAAGATTGACTGCGGGCGACAGTCCTTCTTCGAAACCAGTCAAGATTCAGGTTAAAAACCTAGAAGAACTGTTAGATAAATCAACTGCTTCGTCTGGGTATCACGATAGCTACGATAAACGCAACATTGATACATCTCAAGCCCCAATTGATATGAGTATGGATGTTTTGGATTTGAGTAAAAAACCCAGTGTACCTCAACATCCAGTCCAAGAAGAAAAGGTTGAGTCATCTTTACCTATGATATCATTACCCAAACCAGATGTAAATCTTAGTAATGAAATAATTAACAGCAAGATATTACCTGCAGAGGCTGCCCCAAAATTGGATGCATCAGTTTTGGACAAACAGCACCAGCAATTGCTTTTAGCTCAGCAACAATTATTGAGTGATCCCAATCAATTAATGCAGCAATTATATCGAAATCTACTATTTCCCCAATTTCCTCCATTTTTTATGCCCAACACATTCATGAACAACAATTTCACCGATTTTCAAAAACTTGCACCCATTCTGACACGTATGATGGGCGGAGTTGCAGCAGCAAATTTGCCAACCAACGATATGGAAAAGCCATCAACTCCAACACCTCTGAATCCCATTAACTCGTCAAGCATGCCGCAAATGAGTCCATTAATGTCGGAAAAATCTAACTCAGCAACATTGGCCTCAATGTCATCACCCAAGAGTCTACTTTCGCCAAATCCAAATCATTTATCTATGCCTAGACATATGATGGCATCTCCAGCATCTTCACATCCACCAAATCTGCCGCCTACAATGCTTTCAAATGGTCCCATCAAAATGGTGCTCAAAAATGGTGTATTCATGCCCAAACAAAAACAAAGACGTTATCGTACTGAACGTCCCTTTGCCTGTGAACACTGTTCAGCTCGTTTTACTTTGCGGTCCAATATGGAGCGTCATGTCAAGCAACAACATCCCCAATACTATGCCCAGCGTCAACGTAGTGGACATCATGTTATGCGTGGTCGAGGAGCAAGCAGTGCTGCTAATATGAACAACATCACTCATTTGCAAGCTGCCGTGGCCCAGGCTCATTATGGCTCTACACCGCCCTCGATGAGTTCCCATTCTCCAATTTCGGAACAAGTTAAATGTGCCATATTGGCACAACAACTTAAGGCTCGCAAAGACACCGATTTGCTACAACAAGCCTTGGCTCATGGTTCCAACAGTGTTGCCAATTCAAGTATGTTTTCTCAACAAGGACCTAATCTCAGCAATGGACAAACTCCCTTTTTTGGTTTCAATCCTCATCACAGCCATCATCTAAGTCAAAACGGTACACCCAATGGTTCCATGGAAGATGACGAACCTAAGTTAATAATTGATGAAGATGATGAAGAGGAGGAAGAAGATGAAGACGACATTGAAGAAATTCCCGATGATCAGGAAGAAGATGAAGAACAGGATTTGGTGTTGACTGAATGCGAAGATAAATTAGAATCACGTCATTTACCCACTACTGTTGAAGAAGTTAAGCTCAAGTCCGACCCTCCCCAAGAATCCGCTAAAAAAGTGGCTGAATCAATATTGGAACAAGCCATTAAAGCCAGGCAAAATATCAGCTCATTTGCTAAAACATCAGAACCTCCTACGGTGCCCTCTAACAATAATACCATGAAATCGATGATTGCTCAAGCTCCAGCAGTGGGAAAGTTTTTAAAAGAAGTGGCAAGTTCTTCATTTAAAGATGAATCTCAAGACTTGGTTTCAGTCTCCGAATTAGTAGATAATGCCACTAACAATGCGGTGTCATTTAACAACTACTTCCGTCCATCTGATGTGGCCAACCACATGGAACCTAGTGATGAAGATGGTTTAGTCGCATCCTCAGCCAGTGAAAGTAATAATTCGGGAGCCGAAGATACCATCAGTACTGAAAAACCAAAAAAGAAGTCAGCCTATAGTTTGGCACCCAATCGAGTACATTGCCCCTACTGTCAACGTATGTTCCCTTGGTCCAGTTCCTTGAGAAGACATATTCTCACCCATACAGGACAAAAACCCTTCAAATGCTCTCACTGTCCTCTTTTGTTTACCACCAAAAGTAATTGTGATCGTCATCTTTTGCGAAAACATGGTGATGTGGAGTCTGCTGTATCTGTGTATGTACCAACTGAGGATGTTTCCGAACCTATTCCTTTGCCCAAGTCAGTGGAAGAGATCGAGAGAATGCAAAGAGAACGCGATGAGGAGGAACGCAAACGTAAAGCCGAAGAACAACGAGAACGTTTAGAAAAAGAACAAATGGAAAAGCAAAAATTCGAACAGGAACAGCAGCAAAAGCAAGCATTCCTTAAACACTTAGCTGTAGCACAATTTCAACAGCAATTCAACCAAAAACCCGAAGCTAATCCTGTATCATCATCAGAACTACCCTATAAATGCCACTTGTGCGAAAGTTCCTTTTCTGAACGCTTACAGTGCCTAGAACATATCAAATCTTTGCATGCCCAGGAATTTTCTCTATTGCTGTCGAAAGGTGCCATCGAAAATGAAACTGACTCAGCTCAAATGACTTCAAACGAAGAGGATGAACGCCAACGATCTACCGAAGATGCCGGCAAAGGTGGCAAATATCCCGACTACAGTAATCGTAAAGTCATCTGTGCTTTCTGCATGAGACGTTTCTGGTCAACTGAAGATCTCCGTAGACATATGCGCACGCACTCCGGCGAAAGACCATTCCAGTGCGAAATCTGCTTTAGAAAGTTCACCCTGAAACACAGCATGCTTAGACACATGAAAAAACACAATGGCCTTCACATGAACGGCAGTCAATCGAACAATGACAATTTGGCCAATGGAAATTCCGGCTCTGATTACTCTGACGATGAACAAAGTCCAAGTACAATGCCTACACCAGCCATGCCAATGCCCAGTACCAGCATTAATGCTCTGTTGATGGGCTCAAAATTCCAAGAACTGCTGAATAAGGCAAACGAATGGAGAAATGGAAGTTTGAATGCATTGCGCGATGGTAAGGAAAACAATTCTGAGGAGACAAATACACTGCAGTCATCAGATTTAATTGGCAATTTGCTGGGAATTAGTGATCAGGGTATATTGAACAAATTAATGTCATCGCCTGATGAAGCGGCCAAATTTTTAGGTGTCGACAAGTAA
Protein Sequence: MLVATNAQQTAQNSPKTTRANTPIKMERRDSSSSYSSLEDLEQEGKKLNAVTSTPVVTSDATVSCAVSSLTSSTIRSNQRTDLEGQQLSLHQRMQESDDANDYDEDESADEKSSQPRQQLHYKRRLSGRSLTDKTASVLLEYNADNPNSLRKKFRFNRIVMSNRDESGFVDTSNNSQLMNTSSSTLAVAATNLSNSNNVAKSNSSSDTSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSNNNNNYNSNNTTSTTTPAVSKTTLSNGQLSEGVKLSTTAADTTTSATPIATPLSPAVAETSAVFAADNDDNQKATGANGKQLNGNANLESYESDGGCSSDSSTGHVCNNTNNNNNNNDNDNQNNNNNNDLKINNNNYKRKHSEDQQPQDLVDSIDNTHDLLKRRLRPDINNTASPINSHDNHNDLVSRITRESVVCPVCNDTDFTDNLALDQHMDNKHPEIPAKCKHCDVLFRTHHQLNIHPCSADIKGSINLSVKHRRLSESSNHHGEEDREEADDHVRQRHELFQHFKNAMAHSNSHSSHFNQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCPAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCEDTTKKLHMFSSELEDDCDLMSYHQHQPKDRSTPVSHLKERLTAGDSPSSKPVKIQVKNLEELLDKSTASSGYHDSYDKRNIDTSQAPIDMSMDVLDLSKKPSVPQHPVQEEKVESSLPMISLPKPDVNLSNEIINSKILPAEAAPKLDASVLDKQHQQLLLAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNNNFTDFQKLAPILTRMMGGVAAANLPTNDMEKPSTPTPLNPINSSSMPQMSPLMSEKSNSATLASMSSPKSLLSPNPNHLSMPRHMMASPASSHPPNLPPTMLSNGPIKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRSGHHVMRGRGASSAANMNNITHLQAAVAQAHYGSTPPSMSSHSPISEQVKCAILAQQLKARKDTDLLQQALAHGSNSVANSSMFSQQGPNLSNGQTPFFGFNPHHSHHLSQNGTPNGSMEDDEPKLIIDEDDEEEEEDEDDIEEIPDDQEEDEEQDLVLTECEDKLESRHLPTTVEEVKLKSDPPQESAKKVAESILEQAIKARQNISSFAKTSEPPTVPSNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNAVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTISTEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQRERDEEERKRKAEEQRERLEKEQMEKQKFEQEQQQKQAFLKHLAVAQFQQQFNQKPEANPVSSSELPYKCHLCESSFSERLQCLEHIKSLHAQEFSLLLSKGAIENETDSAQMTSNEEDERQRSTEDAGKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHMNGSQSNNDNLANGNSGSDYSDDEQSPSTMPTPAMPMPSTSINALLMGSKFQELLNKANEWRNGSLNALRDGKENNSEETNTLQSSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260066;
90% Identity: iTF_00922360;
80% Identity: -