Lcup008687.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
RREB1
Assembly
GCA_001187945.1
Location
JRES01000290.1:635927-645678[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.016 1 9.6 1.7 1 21 225 245 225 247 0.95
2 14 0.00027 0.018 15.2 0.2 1 23 257 279 257 279 0.98
3 14 1.9e-05 0.0013 18.8 7.5 1 23 285 307 285 307 0.98
4 14 1.4 93 3.5 0.0 2 23 526 549 525 549 0.86
5 14 0.25 17 5.8 2.5 2 19 555 572 555 572 0.97
6 14 0.016 1 9.6 0.0 1 23 715 737 715 737 0.97
7 14 9.1e-06 0.00061 19.8 1.2 1 23 747 769 747 769 0.99
8 14 0.00067 0.044 13.9 2.0 1 23 775 798 775 798 0.97
9 14 0.0024 0.16 12.2 2.0 1 23 1150 1173 1150 1173 0.95
10 14 0.00014 0.0096 16.0 1.0 3 23 1511 1531 1509 1531 0.97
11 14 0.12 7.8 6.9 6.3 1 23 1537 1560 1537 1560 0.97
12 14 5.1 3.4e+02 1.7 3.1 1 23 1661 1684 1661 1684 0.90
13 14 0.068 4.5 7.6 1.1 3 23 1737 1757 1736 1757 0.91
14 14 0.0008 0.053 13.7 5.7 1 23 1763 1785 1763 1785 0.99

Sequence Information

Coding Sequence
atgttagtCGCCACAAATGCCCAACAAACTGCCCAAAACAGTCCTAAGACCACAAGATCGAATACACCCATTAAAATGGAAAGACGTGATTCTTCATCTTCATATTCGTCTTTGGAAGATTTGGAACATGAGGGTAAAAAACTGAATGCTGTTACCTCAACGCCGGTGGTGACAAGTGATGCTACAATTTCTTGTGCTGTTAACTCTATGACAAGATCTAATCAGAGAACGGAAACGGATAATAATCTGCATCAACGTATGCAAGAATCCGATGAGGCTAATGATTATGATGAAGATGAATCGGCTGATGAGAAATCTTCTCAGCCACGTCAGCAATTACACTATAAACGCCGTTTAAGCGGTCGCAGTCTTACAGATAAAACTGCCAGTGTCTTGCTGGAGTATAATGCTGATAATCCCAATTCTTTACGCAAGAAATTCCGTTTTAATCGCTTTGTCCTCAACAATGGTGATGAATCGGGGTTTGTTGATACCAGCAATAATAGCCAAATGTTGAATAACTCATCTTCAACTTTGGCTGCTGCCGCCACAAATCTGACAAACTCAAATAGTGTTGTAAAATCAAATAGTTCTTCGGAAACCTCTTCGCCACCCCAAAGTAATGGTAATTCTAGTCCAGAATCGGGCATAGGAGAACGTGAAGATATGAAATATATGTGTCCCATCTGTGATGCCGTCTCACAAACAGCCCATCAATTTACAAATCATATACGTTGTCACAATTACGCCTCAGGTCACACGGAGAACTTTACCTGCCGTATTTGCTCTAagGTGCTCTCATCGGCCTCATCATTGGATCGTCATGTTCTAGTGCATACGGGAGAACGAccatttaattgtaaatattgtcATCTCACATTTACCACAAATGGGAATATGCATCGTCATATGCGCACCCATAAACAGCATCAGCATACTCATCATCGACGTAACTCGAATGGAACAAAGTTCaacacaaacaataataattataataacaacacaaCAACGAATCCCGCTGTAAGCAAAACAACATTAAGCAATGGACAATTAAGTGAAGGCGTTAaattatcaacaacaacagcagcagacaCAACGACATCTTCAACAACAGTCACAAGCATAGCTGCGCCAACATCGCCggtaacagcagcagcaacaacagccacAAACACTGCTAATGCTGCTGACAATGATTGTAATCAAAAGGCAACAGGTGCTAATGGCAAACGATTAAATGGTAACGCCAACTTAGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGACTCATCAGCAGGCCAtgtcagcaacaacaataataacaacaatgacaaccaaaataataataacaataatgatttaaaaattaacaataataactaTAAACGCAAACATAGTGAAGATCACCCTCATCAAGATGTAGTAGATGCTATGGAAAGTAATCATCATGATCTCTTAAAGCGACGTTTAAGACTcgaaaccaacaacaacaacagcgatACCACAAACTCACCTGCCAACACCAATGAACAGAATAATGATCTTATTACCCGAATAACTAGAGAATCAGTTGTTTGTCCCGTTTGCAATGAGAGTGATTTTTCGGATAATATGGCTCTTGATCAGCATATGGATAGTAAACATCCGGAAATACCAGCCAAATGTAAAAACTGTGATGTTTTATTCCGTACCCATCATCAGCTCAATATACATCCCTGCACGGCCGATGTTAAGGGATCGATAAATTTATCCGTTAAACAGCGTCGTTTAAGTGAAAGTTCAAATCATCATAACGAAGAAGAAGATCGTGAGGAAACCGAAGATCATCTAAGGCAACGTCATGaactttttcaacattttaaaaatgccaTGGCTCATAGCAATTCCCACTCGTCACATTTTAATCAAGATTTAACGGAGGATGATATTAAATCGGAACCTTCGGCTCATGATTCTAAGGATTTGGCTGATATTCAATCGATCTTGAATATGACCGCCTCTTCAAGTAATTCAAATTTACTAAGAAATTTTGAGCAATCGGTAAATACACCATCCTCGCAATATAGTTATGACAGGGATGAAGAGGAGGCTCAAGATGCTTTCACTTCGGAATTCCGTAAAATGAAATTGCGTGGTGAATTTCCCTGCAAATTGTGTCCAGCAGTATATCCAAATTTGCGTGCTCTAAAAGGACACAATCGTGTACATTTGAGTGAAGCCGGTCCCGCAGGTCCTTTCCGCTGCAACATGTGCCCCTATTCAATATGTGACAAAGCCGCCTTAATACGTCATATGCGTACACATAATGGCGATCGTCCCTATGAGTGTGCAGTTTGCAATTATGCCTTTACCACAAAAGCCAATTGTGAAAGACATTTACGTAATCGTCATGCCAAAACGACTCGAGAGGAAGTTAAACGTGCCATTATTTATCATCCCTCAGAAGATTCATCCTGTGATGATACcaacaaaaaattgcatatgTTTTCATCCGAATTGGATGATGATTGTGATTTAATGTCATACCATCAGCATCAGCCCAAAGATCGTTCAACTCCTGTATCTCATCTCAAGGAGAGACTGACTTTGGGTGAAAGTCCTTCATCGAAACCAGTTAAGATTCAGGTGAAAAATCTTGAAGATCTTTTAGATAAATCAACAGCATCTTCGGGATATCATGATAGCTATGACAAACGTAATGTTGATACATCGCAAGCTCCAATTGATATGAGTATGGATGTTTTAGATTTGAGTAAAAAACCCAGTGCACCACAGCCACCAGTCCAAGAAGAAAAGATTGAATCTTCTTTACCTTTGCTCTCGTTGCCCAAACCAGATGCCAACCTTAATACTGAAGTGATTACCAACAAAGTCATTCCTTCTGAAGTTGATCCAAAATTAGATGTTACTGCCTTGGATAAACAGCACCAGCAGTTACTTTTGGCCCAGCAGCAGTTACTCAGTGATCCTAATCAATTAATGCAGCAATTATATAGAAATCTTCTATTTCCTCAATTTCCTCCATTCTTTATGCCCAACACTTTTATGAATAATAACTTCACTGACTTTCAAAAACTGGCTCCCATTCTAACACGTATGATGGGTGGAGTAGCAGCAGCAACTTTGCCAAACAACGATCTAGAAAAGCCATCAAATTTGACACCTCTCAACACCAATAACTCACCAAGCATGCCACAAATGAGTCCGTTATTAACTGAAAAATCAAATCCAGCCACCATGGCTTCAATGTCATCACCCAAGAGTCTACATTCACCAAATCCTAATCATGTATCTATGCCCAGACATATGATGGCTCCAGCCGCATCTTCACATTCCCCAAATCTGCCACCCACCATGCTATCTAATGGTCCTATTAAAATGGTGCTCAAAAATGGTGTGTTCATgcccaaacaaaaacaaagacgTTATCGTACCGAACGTCCTTTTGCCTGTGAACATTGTTCGGCTCGTTTTACTTTGCGCTCCAATATGGAACGTCATGTCAAACAACAACATCCCCAATACTATGCTCAACGTCAACGTAGTGGTCACCATGTTATGCGTGGTCGTGGTGCTAGCAGCGCTGCTAATATGAACAATATCACTCATTTACAAGCTGCCGTTGCCCAGGCTCATTATGGCTCTACACCTTCCTCTATGAGTTCCCATTCTCCAATTTCGGAACAGGTTAAATGTGCCATTTTAGCGCAGCAACTTAAGGCTCGCAAAGATACTGATTTGCTACAACAAGCCTTAGCTCATGGCTCCAACAGTGTAGCCAACTCAAATATGTTTTCTCAACAAGGACCCAACCTAAGCAATGGACAACCACCTTTTTTTGGTTTCAATcctcatcataatcatcatctaGGTCAAAATGGTACACCTAATGGTTCAATGGAAGATGATGAACCCAAGCTAATAattgatgaagatgatgaagaGGAGGAAGAAGATGAAGATGACGTTGAGGAGATTCACGACGATCAGGATGAAGAGGAAGAACAAGATTTGGTGATAAATGAAAGCGAAGATAAAATAGAAACACGCCATTTACCAACTACTGTTGAAGAGGTAAAACTCAAAGCGGATCCTCCTCAAGAATCGGCTAAAAAAGTGGCTGAATCTATTTTGGAACAAGCCATTAAAGCAAGAACTGTAAGCTCATTTGCTAAAACAACAGATTCTGCTACGGTGACCTCCAATAACAATACTATGAAATCGATGATTGCTCAAGCTCCAGCAgtgggaaaatttttaaaagaagtgGCAAGTTCTTCATTTAAAGATGAATCTCAAGACTTGGTCTCTGTTTCCGAATTAGTCGATAATGCCACCAATAATTCAGTGTCATTCAATAACTATTTCCGTCCATCCGATGTGGCCAACCATATGGAACCAAGCGATGAAGATGGTTTAGTGGCATCCTCAGCCAGTGAAAGTAATAATTCGGGAGCCGAAGACACTGTAAGCACTGAAAAACCCAAAAAGAAGTCAGCTTACAGTTTGGCACCCAATCGGGTACATTGTCCCTACTGTCAACGTATGTTCCCCTGGTCCAGTTCCTTGAGAAGACATATTCTCACTCATACCGGACAGAAGCCCTTCAAATGTTCTCACTGCCCACTTTTGTTTACCACCAAAAGTAATTGTGATCGTCATCTTTTGCGCAAACATGGAGATGTAGAATCGGCCGTATCGGTATATGTACCAACCGAAGATGTTTCCGAACCTATTCCTTTACCCAAGTCTGTGGAAGAGATAGAGAGAATGCAAAGAGAACGCGAAGAAGAGGAACGTAAACGTAAAGCCGAAGAACAAAGAGAACGTTTAGAGAAAGAGCAAATGgaaaaacaaaagtttgaacaggaacagcaacaaaaacaagcaTTCCTTAAGCATTTGGCTGTCGCACAATTTCAACAgcaatttaaccaaaaaaccGAAACCAATTCAGTTTCTTCTTCAGAATTACCCTATAAATGCCACTTGTGCGAAAGTTCATTTGCGGAACGCTTACAATGTCTAGAACATATTAAATCTTTACATGCACAAGAATTTGCTTTACTGCTATCAAAGGGTGCCATTGAAAATGAAACTGACTCAGCTCAAATGACTTCAACCGAAGAAGATGAACGTCAACGCTCTACCGAAGATGGTGCCAAGGGTGGCAAGTATCCCGACTATAGTAACCGTAAAGTCATTTGTGCCTTTTGCATGAGACGTTTCTGGTCTACCGAAGATCTACGACGACATATGCGTACTCATTCCGGTGAAAGACCATTCCAATGCGAAATCTGTTTCAGAAAATTCACCCTTAAACACAGCATGCTTCGTCACATGAAGAAACACAATGGTCTACACATAAATGGCAGTCAGTCGAACAATGACAATTTGGCCAATGGCAATTCCGGCTCTGATTACTCCGATGATGAACAAAGTCCAAACACAATGCCTACACCAGCAATGCCATTGCCCAGTACCAGCATTAATGCACTTTTAATGGGTTCAAAATTCCAAGAACTGCTAAGCAAAGCTAACGAATGGAGAAATGGTAATTTGAATGCATTGCGTGAAGGTAAAGAAAACAATGCAGAGGAAACAAATACACCTCAAACATCAGATTTAATTGGTAATTTGTTGGGTATCAGCGATCAGGgtattttgaacaaattaatGTCATCACCGGATGAAGCTGCCAAATTTCTGGGTGTTGACAAGTAA
Protein Sequence
MLVATNAQQTAQNSPKTTRSNTPIKMERRDSSSSYSSLEDLEHEGKKLNAVTSTPVVTSDATISCAVNSMTRSNQRTETDNNLHQRMQESDEANDYDEDESADEKSSQPRQQLHYKRRLSGRSLTDKTASVLLEYNADNPNSLRKKFRFNRFVLNNGDESGFVDTSNNSQMLNNSSSTLAAAATNLTNSNSVVKSNSSSETSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNTNNNNYNNNTTTNPAVSKTTLSNGQLSEGVKLSTTTAADTTTSSTTVTSIAAPTSPVTAAATTATNTANAADNDCNQKATGANGKRLNGNANLESYESDGGCSSDSSAGHVSNNNNNNNDNQNNNNNNDLKINNNNYKRKHSEDHPHQDVVDAMESNHHDLLKRRLRLETNNNNSDTTNSPANTNEQNNDLITRITRESVVCPVCNESDFSDNMALDQHMDSKHPEIPAKCKNCDVLFRTHHQLNIHPCTADVKGSINLSVKQRRLSESSNHHNEEEDREETEDHLRQRHELFQHFKNAMAHSNSHSSHFNQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCPAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCDDTNKKLHMFSSELDDDCDLMSYHQHQPKDRSTPVSHLKERLTLGESPSSKPVKIQVKNLEDLLDKSTASSGYHDSYDKRNVDTSQAPIDMSMDVLDLSKKPSAPQPPVQEEKIESSLPLLSLPKPDANLNTEVITNKVIPSEVDPKLDVTALDKQHQQLLLAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNNNFTDFQKLAPILTRMMGGVAAATLPNNDLEKPSNLTPLNTNNSPSMPQMSPLLTEKSNPATMASMSSPKSLHSPNPNHVSMPRHMMAPAASSHSPNLPPTMLSNGPIKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRSGHHVMRGRGASSAANMNNITHLQAAVAQAHYGSTPSSMSSHSPISEQVKCAILAQQLKARKDTDLLQQALAHGSNSVANSNMFSQQGPNLSNGQPPFFGFNPHHNHHLGQNGTPNGSMEDDEPKLIIDEDDEEEEEDEDDVEEIHDDQDEEEEQDLVINESEDKIETRHLPTTVEEVKLKADPPQESAKKVAESILEQAIKARTVSSFAKTTDSATVTSNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNSVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTVSTEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQREREEEERKRKAEEQRERLEKEQMEKQKFEQEQQQKQAFLKHLAVAQFQQQFNQKTETNSVSSSELPYKCHLCESSFAERLQCLEHIKSLHAQEFALLLSKGAIENETDSAQMTSTEEDERQRSTEDGAKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHINGSQSNNDNLANGNSGSDYSDDEQSPNTMPTPAMPLPSTSINALLMGSKFQELLSKANEWRNGNLNALREGKENNAEETNTPQTSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00260066;
90% Identity
iTF_00922360;
80% Identity
-