Gvir010494.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gymnocheta viridis
Gene Symbol
RREB1
Assembly
GCA_956483585.1
Location
OY101441.1:29826311-29835304[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.029 3.1 9.6 1.7 1 21 229 249 229 251 0.95
2 14 0.0005 0.053 15.1 0.2 1 23 261 283 261 283 0.98
3 14 3.5e-05 0.0037 18.8 7.5 1 23 289 311 289 311 0.98
4 14 4 4.2e+02 2.9 0.1 1 20 549 569 549 573 0.71
5 14 6.1 6.4e+02 2.3 3.1 2 20 579 597 579 598 0.93
6 14 0.029 3.1 9.6 0.0 1 23 738 760 738 760 0.97
7 14 1.7e-05 0.0018 19.8 1.2 1 23 770 792 770 792 0.99
8 14 0.0012 0.13 13.9 2.0 1 23 798 821 798 821 0.97
9 14 0.0044 0.47 12.2 2.0 1 23 1174 1197 1174 1197 0.95
10 14 0.00027 0.029 16.0 1.0 3 23 1533 1553 1531 1553 0.97
11 14 0.22 23 6.9 6.3 1 23 1559 1582 1559 1582 0.97
12 14 6.4 6.9e+02 2.2 4.1 1 23 1683 1706 1683 1706 0.92
13 14 0.13 13 7.6 1.1 3 23 1759 1779 1758 1779 0.91
14 14 0.0015 0.16 13.7 5.7 1 23 1785 1807 1785 1807 0.99

Sequence Information

Coding Sequence
ATGTTAGTCGCCACAAATCCCCAGCAAACTGTCCAAAACAGTCCCAAGACAACAAGAGccaatacgccaataaaaatgGAAAGAAGAGATTCCTCTTCCTCGTATTCATCTTTGGAAGATTTggaacaagaaagaaaaaaattaaatgccgTTACCTCTACGCCGCTGGTAACAAATGAGGCTGCAAATGCTTGCAATGCAAGTGTTAAAACCAGTGCAAAAATGATTCAGAGGACAGATACAATTGAGCAGCAGCAAATCCTGCATCAGCGTATGCAGGAATCCGACGATGCTAATGATTACGACGAAGACGAATCAGCCGATGAGAAATCTACACAGCCACGTGAGCACTACAAACGTCGTCTCAGTGGGCGCAGCCTAACGGATAAAGCCACCAGCTATCTCGTAGACTACAATGCCAATAACCCCAATTCATTACGCAAGAAGTTTCGCTCCAACCGTTTTGTACTAAACAACGGCGATGAGTCGGGCTTCGTGGATACCAGCAGCAATAGTCAATTAAGGAATACGACAGCTTCATCAACTTTAGCAGTTACAGCAACGAATGAGTCAAACTCGAACAACAATTCCAAATCAAATAGTTCATCCGATTCCTCGTCGCCACCCCAAAGCAATGGTAACTCTAGTCCAGAATCAGGTATAGGAGAACGTGAGGATATGAAATATATGTGTCCCATATGCGACGCAGTTTCACAAACGGCTCATCAATTTACAAATCATATACGTTGTCACAATTACGCCTCAGGACACACGGAAAACTTCACCTGCCGTATATGCTCCAAGGTGCTATCGTCTGCCTCTTCATTGGATCGCCATGTTCTAGTGCATACGGGAGAACGGccatttaattgtaaatattgtcATCTAACATTTACCACCAACGGGAATATGCACCGTCATATGCGTACCCACAAGCAGCATCAGCATACTCATCATAGACGCAACTCGAATGGAACAAAGTTCAAcgcaaacaacaataacaacaatagctTCAATGGTAATAacacagcagcaacaacaacaatgacgACGACACCAGCTGTAAATAAGCCAGCGCTAAGCAATGGACAATTAAATGAAGGCGTTAAATTATCAACTATAACAGACACAACGCtggcaacagcaacaacattgaCTGCGCCGTCATCACCAGCAGCAGCAGCGGCTGCagcagtaacaacaacaacatcaacaaccgCGACAGTGAACGCTTCTGATAATAATTACAATGAAAAGGCAACAGGTGCTAATGGCGAACGTTTAAATGGTAACGCCAACTTGGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGATTCATCAGCGGGTCATGTCTATAACACCAGcagcaataacaataacaacaacaacaatattaacaacaacaatgttaacaacaacaatattaacaacaacaatgacaaacaaaataataataacaattttcaaattaataataattataaacgCAAGCACAGTGATGATCTGCCGCAACAAGACGTACTGGATTCAAAAGAAAGcaatcatgaaattttaaagcGTCGTTTGAGACCAGACACTTCAAAGTCCCCGCCCCCCGTCATACACAACAATAATGATTTAATAAACAATACAAGTGATACGTTCGTTTGTCCCATTTGCAATGAGAGCGATTTTTCTGATAATTTGGCCCTGGATCAGCACATTGATGACAAACATCCGAAAATTCCCGCCAAATGTAAACATTGTGGCGTAATCTATCTTACCCAACACCAGTTTAACATCCATGTCTGTCCGGCCGATGTCAAAAGCTCCATTAATTTGTCAATGAAACACCGTCGTTTAAGTGAAGGCTGTAAGCAACATACGGAGGAAGATCGTGAGGAATCTGAAGATAATGCTAGACAGAGACATGAActatttcaacattttaaaaatgtcatggCTCATAGCCATTCACCTTCGCCACACTTTCATCAAAATTTGAATGAAGATGATATTAAGTCCGAACCATCGGCTCAAGATTCCAAAGATTTGGCTGATATtcaatcaatattaaatatgaCAGCTTCTTCGAGCAACTCAAATTTACTCAGGAACTTTGAACAATCGGTGAATACACCTTCCTCTCAATATAGTTATGATAGGGACGAAGAGGAAGCACAAGATGCTTTCACTTCGGAATTTCGAAAAATGAAGTTGAGAGGTGAGTTTCCCTGCAAGCTCTGTCCGGCCGTGTACCCCAACTTAAGAGCTTTGAAAGGCCATAACCGGGTACATTTAAGTGAGGCCGGTCCAGCGGGTCCCTTTCGTTGCAATATGTGCCCATATTCTATATGCGACAAGGCCGCCTTGATTCGTCACATGCGCACTCACAATGGTGATCGTCCGTATGAGTGTGCTGTGTGTAACTATGCCTTTACAACCAAAGCCAACTGTGAAAGACATTTGCGCAATCGCCATGCGAAAACTACTCGCGATGAAGTCAAACGTGCCATTATATATCATCCGTCAGAAGATTCGTCCTGTGAAGACACTACCAAAAAATTGCACATGTTTTCAGCAGAGTTGGAGGAAGATTACGATTCGATATCTTATCATCAACACCCGCCAAAAGATCGTTCAACACCAGTGTCTCATCTGAAGGAAAGATTGACTTCGGGTGATAGTTCTTCTGGAAAACCTGTTAAGATTCAGGTGAAAAACCTTGAAGATCTCTTGGATAAATCGACTGCTTCATCAGGTTACCATGATAGCTATGATAGACGTAACATCGAAACATCTCAGGCCCCCATTGACATGAGCATGGATGTTTTAGATTTAAGTAAAAAGCCTAGTGCCGCCCAGCAACCAGTTCAGAAAGTAAAGGTGGAATCATCTATACCTATTCAGAGTTTACCAAAACCAAATGTAAATCCCAGCAGTGACATTATGAAGTACAAAGTAGCTCCTACGGAAGCTGATACGAAATTGGACACATCAGCGTTGGATAAACAACACCAACAATTGCTTTTTGCTCAACAACAACTACTCAGTGATCCAAATCAATTAATGCAGCAATTATATCGTAACCTATTGTTTCCTCAGTTCCCGCCGTTTTTTATGCCCAACGCTTTTATGAACAGCAACTTtgcagattttcaaaaacttgctCCTATTCTAACTCGTATGATGGGTGGGGTTGCAGCAGCAGCAATGCCACACAGCGATATTGAAAAACCATCAACATTACCAACACCCATGAGCAGCAACGACCCCTCAGGTATGACGCAAGTGAGTCCATTAGTACCGGAAAAATCTAGTTCAGCAACATTGGACACAATGTGTTCACCTAAGAGTTTACTTTCGCCAAATTCAAATCACTTGCCCATGCCAAGGCATATAATGCCCTCTGTGCCATCATCACATTCCCCAAATTTGCTGCCAACAATGCTTTCAAATGGTCCTGTCAAAATGGTGCTCAAAAATGGTGTGTTCATGCCCAAGCAAAAGCAAAGACGTTATCGAACAGAACGGCCATTTGCCTGTGAACATTGTTCGGCGCGTTTTACCTTACGCTCAAATATGGAACGCCATGTCAAACAACAACATCCACAGTTTTACGCTCAACGACAACGCAGTGGACATCATGTTATGCGTGGCAGGGGAGCAAGCAGTGCTGCTAATATAAATAGCATCTCGCATTTTCAAGCTGTAGCTCAGGCTCATTATAACTCTGCGCCGCCTTCAGTGAGCTCTCATTCTCCTATTTCCGATCAGGTTAAATGTGCCATACTAGCCCAACAACTTAAGGCACGCAAAGATACTGATCTGCTACAGCAAGCCTTGGCTCATGGTTCCAACAGTGTAAACAACTCCAGTATGTTTTCTCCACAAGGACCAAATCTCATTAATGGACAGCCAAATTTTTATGCATTCAATCCTAATCATGGCCATCATATAAGTCAAAATGGTACACCGAATGGGTCCATGGAAGATGATGAGCCAAAGTTAATAATCGATGAAGATGACGAGGAAGATGATGAAGATGACATTGAAGGGATTCCTGATGATCAGGAGGAAGATGAAGAAAATGAATTGGCGTTGAATGGATGCGAAAATAAATCGGAAATACGTCATTTGCCAACAACAGTTGAACAAGTTAAGCTCAAGTTAGATAAGCCGCAAGAATCTGCTAAGCAAGTCGCCGAGTCTATATTAGAACAAGCTATTAAAGCTAAGCAAAATATAAGTCCTTTTGTTAAAACTTTAGATCCTTCTTTGGCAGCCTCTAACAATAACACAATGAAATCGATGATTGCTCAAGCTCCAGCTGTTGGTAAATTTCTAAAGGAAGTAGCAAGTTCTTCATTTAAGGACGAGTCTCAAGATTTGGTGTCAGTCTCTGAATTAGTAGATAATGCCACTAACAACTCGGTGTCATTCAACAGCTACTTCCGTCCCTCGGATGTGGCCAACCATATGGAGCCCAGCGACGAAGACGGTTTAGTCGCCTCTTCGGCCAGTGAAAGTAATAATTCCGGAGCCGAAGATACTGTAAGTGCCGAAAAACCTAAAAAGAAATCAGCGTACAGTTTGGCACCAAATAGAGTGCATTGTCCCTATTGTCAACGTATGTTCCCTTGGTCCAGTTCCCTCAGAAGGCATATTCTCACGCATACGGGACAGAAACCCTTTAAGTGCTCTCACTGTCCTCTCTTGTTTACGACCAAGAGTAATTGTGATCGTCATCTTTTGCGAAAACATGGAGATGTAGAGTCTGCTGTATCTGTCTATGTGCCAACTGAAGATGTCTCCGAGCCCATTCCTTTGCCCAAGTCTGTCGAGGAGATAGAAAGAATGCAAAGAGCACGCGAGGAAGAAGAACGTAAACGTAAAGCCGAAGAACAGAGAGAACGTTTAGAAAAGGAACAATTGGAGAAGCAAAAGTTTGAACAGGAGCAACATCAAAAGCAAGCATTTCTGAAACAATTAGCGGTCGCACAATTTCAACAACAGTTCACGCAAAAGCCTGAAGCAAATCCAATATCGTCCTCTGAGCTGCCTTTCAAATGTCACTTGTGTGAAAATTCATTTTCTGAACGCCTACAATGCTTAGAGCACATCAAATCGCTGCATGCCCAAGAGTTTGCCTTACTGTTGTCGAAGGGAgccattgaaaatgaaacggACTCAGCTCAAATGACGTCGACTGAAGAAGATGAGCGCCAACGATCTGCCGAAGATACAGCTAAAGGAGGAAAGTATCCGGACTATAGTAACCGCAAGGTCATTTGTGCTTTTTGCATGAGACGTTTCTGGTCGACTGAAGATCTCCGTCGGCATATGCGCACACACTCTGGCGAAAGGCCATTTCAATGTGAAATTTGCTTCAGAAAATTCACTCTCAAACACAGCATGCTTCGTCACATGAAAAAACACAACGGTCTTCACATCAATGGCAGTCAATCAAGCGTTGATAATTTGGTCAATGGCAATTCTGGCTCTGATTATTCGGACGATGAACAAAGTCCAAACACATTGCCAACACCTGCTCTACCAATACCAAGTACCAGTATTAATGCTTTATTGATGGGCTCAAAATTTCAAGAGCTTCTACAGAAAGCCAATGAATGGAGAAATGGGAGCTTGAATGCATTGCGCGACGGTAAGGAAAACCATTCAGAGGAAACAAACACACCTCAATCGTCGGATTTGATTGGCAACTTGCTGGGCATCAGTGATCAGGGAATACTGAATAAATTAATGTCGTCACCAGATGAAGCCGCCAAATTTTTAGGTGTTGACAAATAG
Protein Sequence
MLVATNPQQTVQNSPKTTRANTPIKMERRDSSSSYSSLEDLEQERKKLNAVTSTPLVTNEAANACNASVKTSAKMIQRTDTIEQQQILHQRMQESDDANDYDEDESADEKSTQPREHYKRRLSGRSLTDKATSYLVDYNANNPNSLRKKFRSNRFVLNNGDESGFVDTSSNSQLRNTTASSTLAVTATNESNSNNNSKSNSSSDSSSPPQSNGNSSPESGIGEREDMKYMCPICDAVSQTAHQFTNHIRCHNYASGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNANNNNNNSFNGNNTAATTTMTTTPAVNKPALSNGQLNEGVKLSTITDTTLATATTLTAPSSPAAAAAAAVTTTTSTTATVNASDNNYNEKATGANGERLNGNANLESYESDGGCSSDSSAGHVYNTSSNNNNNNNNINNNNVNNNNINNNNDKQNNNNNFQINNNYKRKHSDDLPQQDVLDSKESNHEILKRRLRPDTSKSPPPVIHNNNDLINNTSDTFVCPICNESDFSDNLALDQHIDDKHPKIPAKCKHCGVIYLTQHQFNIHVCPADVKSSINLSMKHRRLSEGCKQHTEEDREESEDNARQRHELFQHFKNVMAHSHSPSPHFHQNLNEDDIKSEPSAQDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCPAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCEDTTKKLHMFSAELEEDYDSISYHQHPPKDRSTPVSHLKERLTSGDSSSGKPVKIQVKNLEDLLDKSTASSGYHDSYDRRNIETSQAPIDMSMDVLDLSKKPSAAQQPVQKVKVESSIPIQSLPKPNVNPSSDIMKYKVAPTEADTKLDTSALDKQHQQLLFAQQQLLSDPNQLMQQLYRNLLFPQFPPFFMPNAFMNSNFADFQKLAPILTRMMGGVAAAAMPHSDIEKPSTLPTPMSSNDPSGMTQVSPLVPEKSSSATLDTMCSPKSLLSPNSNHLPMPRHIMPSVPSSHSPNLLPTMLSNGPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAANINSISHFQAVAQAHYNSAPPSVSSHSPISDQVKCAILAQQLKARKDTDLLQQALAHGSNSVNNSSMFSPQGPNLINGQPNFYAFNPNHGHHISQNGTPNGSMEDDEPKLIIDEDDEEDDEDDIEGIPDDQEEDEENELALNGCENKSEIRHLPTTVEQVKLKLDKPQESAKQVAESILEQAIKAKQNISPFVKTLDPSLAASNNNTMKSMIAQAPAVGKFLKEVASSSFKDESQDLVSVSELVDNATNNSVSFNSYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTVSAEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVSEPIPLPKSVEEIERMQRAREEEERKRKAEEQRERLEKEQLEKQKFEQEQHQKQAFLKQLAVAQFQQQFTQKPEANPISSSELPFKCHLCENSFSERLQCLEHIKSLHAQEFALLLSKGAIENETDSAQMTSTEEDERQRSAEDTAKGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICFRKFTLKHSMLRHMKKHNGLHINGSQSSVDNLVNGNSGSDYSDDEQSPNTLPTPALPIPSTSINALLMGSKFQELLQKANEWRNGSLNALRDGKENHSEETNTPQSSDLIGNLLGISDQGILNKLMSSPDEAAKFLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00260066;
90% Identity
-
80% Identity
-