Chom010925.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cochliomyia hominivorax
Gene Symbol
RREB1
Assembly
GCA_004302925.1
Location
PYHX01000590.1:788306-794724[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.02 1 9.9 1.8 1 21 225 245 225 247 0.95
2 11 0.00035 0.018 15.4 0.2 1 23 257 279 257 279 0.98
3 11 2.4e-05 0.0013 19.0 7.5 1 23 285 307 285 307 0.98
4 11 2.4 1.2e+02 3.3 0.1 3 23 538 560 536 560 0.84
5 11 0.11 6 7.5 4.4 2 21 566 585 565 586 0.93
6 11 0.039 2 8.9 0.1 1 23 727 749 727 749 0.97
7 11 1.2e-05 0.00061 20.0 1.2 1 23 759 781 759 781 0.99
8 11 0.00086 0.045 14.2 2.0 1 23 787 810 787 810 0.97
9 11 0.0031 0.16 12.4 2.0 1 23 1163 1186 1163 1186 0.95
10 11 0.00019 0.0097 16.2 1.0 3 23 1528 1548 1526 1548 0.97
11 11 1.2 60 4.3 0.4 1 13 1554 1566 1554 1567 0.92

Sequence Information

Coding Sequence
atgttagtCGCCACAAATAATACACAAACTGCCCAAAATAGTCCCAAAACCACCAGAGCTAATACACCCATTAAAATGGAAAGAAGAGATTCTTCATCATCATACACCTCCTTGGAGGATTTAGAACATgagggaaaaaatttaaatgccgTTACCTCAACACCAGTGGTGACCAGTGATGCCACCATTAGCTGTGATGTTAACTCTACACCGAGAGGACAACAAAGAGCAGATGCCACagagcagcaacaacaaagatTGCAAGAATCCGATGAGGCCAATGATTATGATGAAGATGAATCGGCTGATGAGAAATCCGCACAACCACGTCAGCTTATGCATTATAAACGTCGCCTTAGTGGTCGTAGTCTGGCGGATAAAACAGCTAGTGTTTTGTTGGAATATAATCCAGATAATCCCAATTCTTTGCGCAAAAAATTTCGCTTCAATCGTTATGTTCAAAACAATGGCGATGAATCGGGTTTTGTAGATGCCAGCAATAACAGCCAAACCATGAATAATTCTTCGTCGCTATTAACATCCAATAATACAAATCAaagtaatacaaataataatacaaaatcgAATAGTTCTTCGGATACCTCTTCACCGCCACAAAGTAATGGTAATTCTAGTCCAGAATCAGGTATAGGAGAACGGGAAGATATGAAATATATGTGTCCCATCTGTGATGTAGTCTCACAAACTGCCCATCAATTCACAAATCATATACGTTGTCACAATTATGCCCCTGGTCACACGGAGAATTTCACGTGCCGTATTTGCTCTAAGGTGCTCTCATCTGCCTCATCATTGGATCGTCATGTTCTAGTGCATACGGGAGAACGAccatttaattgtaaatattgtCATCTTACATTTACCACAAATGGAAATATGCATCGTCATATGCGCACTCATAAACAGCATCAGCATACTCATCATCGACGTAACTCGAATGGAACAAAGTTCAActcaaacaataataataacaacaacaacaatagtagtaataataataataataataattataatagcagtaatagtaaaaataacaacagcaacaacaattcaTCAGctgtaaataaaacaacattaagCAATGGACAATTAAGTGAAGGCGTTAAATTATCTCCAACACAAGTCGAACAACTAACATCAACAACAGCTACTGCTACCACAACGACGACAACAACAGTAGCAGCAACCTCCTTACCAtctgccaacaacaacaacaacaaccataataACGCTTCAGACAATGATTGTAATCAAAAGTCATCGTCAACAGGTGCTAATGGCAAACGATTAAATGGTAACGCCAACTTAGAAAGTTATGAAAGTGATGGTGGCTGCTCATCAGATTCATCAGCAGGTCGTTTatccaccaacaacaacaataataataataacaacgataatcaaaataataacaataatgatttaaaaattaacaataataattataaacgtAAACACAGTGATGATTACGATCAGCCTTCTAATGTTGATCAAGTTGATTCTGCTTCAGATAATCATCAAGAGCTTTTGAAGCGATGTTTAAGACCTGATCTCCAAAACGACTCTGCCAACAGTGATGAAATCATTTGTCCCGTTTGCAATGAGAGTGATTTTACTGATAATCAGGCATTAGATCAACATATGGATAATAAACATCCGGAAATTATGGtaaaatgtaaacattgtggTGTTTATTTCCGTAGTCATCAACAATTGAGTTTGCATTATTGTTCTGCCGATGTTAAGGGTTCTGTTAACTTAAGTGTTAAACAGCGTCGCCTTAGTGAAAGCTCCTACCAGCCACGAAAGTCTCTAGTGGATCCTGATGATCAAGAGGAGAATTTGAGCAGAAGTCATGagttatttcaacattttaaaaatgccATGACCTCTAACAATTCACCCTCCTCACAATTCCATCAAGATCTCACCGAAGATGATATTAAATCGGAACCTTCTGCCCATGATTCTAAGGATTTGGCTGATATACAATCGATTTTGAATATGACCGCCTCATCCagtaattcaaatttattgcgCAATTTCGAACAGTCTGTTAATACACCCTCCTCGCAATATAGTTACGATCGTGATGAAGAAGAAGCTCAAGATGCTTTTACCTCCGAGTTCCGTAAAATGAAGTTGCGTGGTGAATTCCCTTGCAAGTTATGTACTGCTGTCTATCCTAATTTACGTGCTTTAAAAGGACACAATCGTGTGCATTTGAGTGAGGCTGGACCAGCCGGTCCCTTCCGCTGTAACATGTGTCCTTACTCGATATGCGATAAGGCCGCCCTTATTAGACACATGCGTACACACAATGGTGATCGTCCTTATGAGTGTGCTGTATGCAATTATGCCTTTACCACCAAAGCCAATTGTGAGAGACATTTGCGTAACCGTCATGCCAAAACTACTCGAGAAGAAGTTAAACGTGCCATTATATATCATCCCTCAGAAGATTCGTCTTGCGATGATACCAACAAGAAATTGCATATGTTCTCTTCCGAGTTGGAAGATGATTGCGATTTAATGTCTTATCATCAACATCAGCCCAAAGATCGTTCAACACCCGTTTCTCATCTCAAGGAAAGATTGATTTCCGGTGATAGTCCTACAGCAAAACCAGTAAAGATCCAAGTGAAAAATCTAGAGGAACTATTAGACAAATCTACAGCTTCTTCAGGATACCATGATAGTTATGATAAACGTAACATAGATACTTCTCAAGCGCCAATTGATATGAGTATGGATGTTTTGGATTTAAGCAAGAAACCTACTTCTACTCCTGCTGCCATGCAAGAGGAAAAAGTTGAGTCCTCTATCCCCTTGATCTCCTTACCCAAACCATCTCCAGTTTTAAGTAATGAACTAAATGGCAATAAGTTGCTTCCCTCAGAAACTGATCCCAAATTGGATATTTCTGCTTTGgataaacagcaacaacaattgctTTTGGCTCAGCAACAATTTCTCAGTGATCCAAATCAATTAATGCAACAGTTATATCGTAATCTTTTGTTTCCTCAATTCCCGCCTTTCTTTATGCCCAACACTTTTATGAATACCAACTTTagtgattttcaaaaacttGCTCCTCTTCTGACACGCATGATGGGTGGTGTGGCAGCCGCCTCAATGCCAAATAATGATATTGAAAAGCCATCTCCTTTAACTACACCTTTGAATCCCGCTAATTCACCCAGTTTATCACAAATGAGTCCTTTATTGTCTGAAAAATCAAACTCAGCCGCAATGAATTCCATGTCGTCACCCAAAAACTTACTCTCACCAAATCCAAACCATTTGTCTATGCCAAGACATATGATGGGTGCTAGTGCTCCTGCTCATCCTGCTAACTTACCACCCACAATGCTTTCTAATGGTCCTGTGAAAATGGTGCTCAAGAATGGTGTTTTCATGccgaaacaaaaacaaagacgTTATCGTACAGAACGTCCATTTGCCTGTGAACATTGTTCGGCTCGTTTCACCTTACGCTCTAACATGGAACGTCATGTCAAACAACAACACCCCCAGTTCTATGCCCAACGTCAACGTAGTGGTCATCATGTTATGCGTGGTCGAGGAGCCAGCAGTGCTGCTAATATGAATAGCATTTCTCATTTGCAAGCCGCTATGGGTCAAGCTCATTATGGTTCTCAACCCACGTCGATGAATTCTCATTCTCCCATTTCGGATCAGGTAAAATGTGCCATATTGGCACAACAACTAAAAGCACGCAAAGATACTGATTTACTGCAACAAGCTTTAGCTCATGGCTCTAATAGTGTGGCCAATTCAAATATGTTCTCACAGCAAGCGCCCAATCTCAACAATGGGCAACCacctttttttaactttaatccaCACCATGGTAATCATTTAAGCCAAAATGGTACACCGAATGGTTCCATGGAGGATGATGAACCCAAACTAATAATCGATGAGgatgaagaagatgaagaagaagatgaGGAAGAAATTGAAGAGATACCCGATGAtcaagaagatgaagaagatcATGATGTAGTCATAAACGAAAGTGAGGAGAAGGTGGCGGAAGCAGAACATTTACCCACTACGGTGGAAGGAGTTAAGCTCAAATCAGATGAACCCCAAGAATCAGCTAAAAAGGTGGCTGAATCTATATTAGAACAAGCCATTAAAGCCAGACAGAATATAAGTTCCTTTGCTAAAACCTCAACAGAACCCCTGGCTACTGTAACTAATAACAATAACACCATGAAATCAATGATTGCTCAAGCCCCAGCTGtgggtaaatttttaaaagatgtaGCCAGCTCTTCATTTAAAGATGAGTCACAAGATTTGGTATCAGTCTCGGAATTGGTAGATAATGCCACTAATAATGCTGTGTCCTTCAACAACTATTTCCGCCCTTCCGATGTGGCTAATCATATGGAGCCAAGCGATGAAGATGGCTTAGTGGCTTCTTCGGCTAGTGAAAGTAACAATTCGGGAGCTGAAGATACTGTAAGTACAGAAAAGCCAAAAAAGAAATCTGCCTACAGTTTGGCACCCAACCGTGTACATTGCCCATATTGTCAACGTATGTTCCCCTGGTCCAGTTCTTTGAGAAGacatatactcacacatacaggACAAAAACCTTTCAAATGCTCACATTGTCCTCTGCTCTTTACCACCAAAGCAATTGCGATCGTCATCTTTTGCGCAAACATGGAGATGTTGAATCTGCTGTATCTGTATATGTACCCACAGAAGATGTTTCTGAACCTATACCTTTACCCAAATCTGTGGAAGAGATTGAACGTATGCAAAGAGAACGTGAAGAAGAGGAACGTAAACGTAAGGCGGAAGAGCAACAAAGAGAACGTTTGGAAAAGGAACAACTAG
Protein Sequence
MLVATNNTQTAQNSPKTTRANTPIKMERRDSSSSYTSLEDLEHEGKNLNAVTSTPVVTSDATISCDVNSTPRGQQRADATEQQQQRLQESDEANDYDEDESADEKSAQPRQLMHYKRRLSGRSLADKTASVLLEYNPDNPNSLRKKFRFNRYVQNNGDESGFVDASNNSQTMNNSSSLLTSNNTNQSNTNNNTKSNSSSDTSSPPQSNGNSSPESGIGEREDMKYMCPICDVVSQTAHQFTNHIRCHNYAPGHTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSNNNNNNNNNSSNNNNNNNYNSSNSKNNNSNNNSSAVNKTTLSNGQLSEGVKLSPTQVEQLTSTTATATTTTTTTVAATSLPSANNNNNNHNNASDNDCNQKSSSTGANGKRLNGNANLESYESDGGCSSDSSAGRLSTNNNNNNNNNDNQNNNNNDLKINNNNYKRKHSDDYDQPSNVDQVDSASDNHQELLKRCLRPDLQNDSANSDEIICPVCNESDFTDNQALDQHMDNKHPEIMVKCKHCGVYFRSHQQLSLHYCSADVKGSVNLSVKQRRLSESSYQPRKSLVDPDDQEENLSRSHELFQHFKNAMTSNNSPSSQFHQDLTEDDIKSEPSAHDSKDLADIQSILNMTASSSNSNLLRNFEQSVNTPSSQYSYDRDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVYPNLRALKGHNRVHLSEAGPAGPFRCNMCPYSICDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCDDTNKKLHMFSSELEDDCDLMSYHQHQPKDRSTPVSHLKERLISGDSPTAKPVKIQVKNLEELLDKSTASSGYHDSYDKRNIDTSQAPIDMSMDVLDLSKKPTSTPAAMQEEKVESSIPLISLPKPSPVLSNELNGNKLLPSETDPKLDISALDKQQQQLLLAQQQFLSDPNQLMQQLYRNLLFPQFPPFFMPNTFMNTNFSDFQKLAPLLTRMMGGVAAASMPNNDIEKPSPLTTPLNPANSPSLSQMSPLLSEKSNSAAMNSMSSPKNLLSPNPNHLSMPRHMMGASAPAHPANLPPTMLSNGPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAANMNSISHLQAAMGQAHYGSQPTSMNSHSPISDQVKCAILAQQLKARKDTDLLQQALAHGSNSVANSNMFSQQAPNLNNGQPPFFNFNPHHGNHLSQNGTPNGSMEDDEPKLIIDEDEEDEEEDEEEIEEIPDDQEDEEDHDVVINESEEKVAEAEHLPTTVEGVKLKSDEPQESAKKVAESILEQAIKARQNISSFAKTSTEPLATVTNNNNTMKSMIAQAPAVGKFLKDVASSSFKDESQDLVSVSELVDNATNNAVSFNNYFRPSDVANHMEPSDEDGLVASSASESNNSGAEDTVSTEKPKKKSAYSLAPNRVHCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKAIAIVIFCANMEMLNLLYLYMYPQKMFLNLYLYPNLWKRLNVCKENVKKRNVNVRRKSNKENVWKRNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00260066;
90% Identity
-
80% Identity
-