Mqua011440.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melangyna quadrimaculata
Gene Symbol
-
Assembly
GCA_949320155.1
Location
OX439483.1:179502195-179503685[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.019 3e+02 3.7 0.1 22 46 211 235 204 241 0.79
2 7 0.0032 52 6.2 0.1 21 49 238 265 232 268 0.86
3 7 0.0072 1.2e+02 5.1 0.2 21 48 293 320 272 324 0.84
4 7 0.004 65 5.9 0.1 21 46 321 346 317 353 0.84
5 7 0.0054 88 5.4 0.1 18 45 373 401 364 408 0.84
6 7 0.0012 20 7.5 0.0 22 45 434 457 430 460 0.89
7 7 0.0054 87 5.5 0.1 21 46 461 486 458 490 0.89

Sequence Information

Coding Sequence
ATGGCTGGCGAGTTAACACAAATCGAGTTCTCTAATTTGGTCAAGGACGGCAACTGCACCTTTACTGACTGGCCAGACGACAATGATGCGCATGAAGATAGTGACACCCACGGACTACTCATGACCCAAGATATGATAAAGCAAGAGCCAGAGTTACTAGTTGACTTAAATAACCCAGATGAGGAGCATAAAATACGTTCGTTCCTCAAGAAAACACACGTCAATGATAAAGAGAGGCAACAACTCAACTGGCTTATTTGTCTCCTATGCGATGAGCGTTTTCTATCCACTAAACAACTGTCACTACATGTGCTAGAGCACACGAAATCCGAATTGAAAGAAGATATCCCAAAGGAACTGACCAACCGCCAAGCACCCAAAACTCAATACACTGGGTTCTCGAGGCAGGAACTACTGCAAGAGTATGTAAACATCACCGTCGAACTGGATGGAAAGCCTACATATACCTGCAAGCTGTGTCCCAATAAAATATTTGCCCGGCAGGTCTCTATACGAAACCACATGAGAATCCATGAAAATCCCACATATAAAGAACGCTCCTGCCATGTCTGCCAAAAGACATTCCTTCGACGAGATACACTTTTAGTCCACTTGAGGGTTCACAGCGACGAACGAAAGTACACATGTGACATTTGCGAGGCCAGCTTTACACATTCCAGTTCCCTGGTCTCGCATAAACGTATCCATACTGGCGAAAAACCCTACCTGTGTTCTATCTGTAGCAAAACGTTTCGCGAGTCTGGCCAGCTAACAGCTCACAGAAAAATCCATTTTGATAAACTATTGCcatgccccaaatgcgacaagaTGTTCACCTCCAATAAGACCCTACGCGGTCACTGCCGTACGCATACCGATGAGCGTCCGTATGCATGCTCGTTCTGTGCTAAGAAGTTTCGTTTTAGTGCGAGTCTGACGACACATCTACGAGTGCACACAGGTGAAAAGCCATACAAATGCGAGATATGCTCCTACGCGACAAAACAGTCTGGCTATCTGAGCACGCACATGCGTACCCATACCGGTGagaaaccctacaaatgcactTACTGCGACAAGGGGTTCTCGGAAAAGAAGCGTCTAGTGACGCACACCCGAAGTCATACGGGTGAACGTCCGTACAAGTGCATATATTGTGATGCCGCATTCGCTCGGAATGATAACCTCAAGTATCACCTGCGAACACACACCGGGGAGCGGCCATTCGAATGTGCTGATTGCGGAAAAAGATTTAGTCAACGTACATCACTCCTTGTTCACCAAAAAATTCACACCGGCGATAAGCCCTATTCTTGCCCCCATTGCGATATGAACTTCCGCCAGAGCGGGACCTTGGTCACTCATTTGTTGATGCACACAGACGAACGACCATTTAAGTGTGATCTCTGTGAAAGGGGATTTAGACAGAGGGCTTTGCTGAAACGACATGTCGCCAGTGCACATGGGGGTGTTATTGTTAAGCAGAAATAG
Protein Sequence
MAGELTQIEFSNLVKDGNCTFTDWPDDNDAHEDSDTHGLLMTQDMIKQEPELLVDLNNPDEEHKIRSFLKKTHVNDKERQQLNWLICLLCDERFLSTKQLSLHVLEHTKSELKEDIPKELTNRQAPKTQYTGFSRQELLQEYVNITVELDGKPTYTCKLCPNKIFARQVSIRNHMRIHENPTYKERSCHVCQKTFLRRDTLLVHLRVHSDERKYTCDICEASFTHSSSLVSHKRIHTGEKPYLCSICSKTFRESGQLTAHRKIHFDKLLPCPKCDKMFTSNKTLRGHCRTHTDERPYACSFCAKKFRFSASLTTHLRVHTGEKPYKCEICSYATKQSGYLSTHMRTHTGEKPYKCTYCDKGFSEKKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGERPFECADCGKRFSQRTSLLVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTDERPFKCDLCERGFRQRALLKRHVASAHGGVIVKQK