Svit004550.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:64772313-64773797[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.048 6.1e+02 1.7 0.2 22 46 211 235 204 241 0.78 2 7 0.0014 18 6.6 0.1 21 49 238 265 233 268 0.85 3 7 0.0013 16 6.8 0.2 21 46 293 318 272 321 0.86 4 7 0.00027 3.4 8.9 0.1 21 45 321 345 319 353 0.89 5 7 0.0036 45 5.3 0.1 20 45 376 401 369 408 0.84 6 7 0.00075 9.5 7.5 0.0 22 45 434 457 430 460 0.89 7 7 0.0015 18 6.6 0.2 21 47 461 487 458 490 0.89
Sequence Information
- Coding Sequence
- atggctGGCGAGTTAACACAAATCGAATTCTCAAATTTGGTCAAGGACGCCAACTGCACCTTCACCGACTGGACAGACGACAACGACGTGGACGAAGATAATCACATAAATGAAGTTCTCATGACGGAAGACATGATCAAACAAGAGCCAGAGTTATTGGTTGATCTAAATAACCCAGATGAGGAGCATAAAATACGTTCGTTCCTTAAGAAAACTCACGTCGATGACGAGGAGAGACAACATCTCAATTGGCTTTCATGTTTACTCTGTGATGAGCGTTTTCTATCCACCAAAGAACTGTCCCTACATGTGCTGAAACACACGAAATCCGAATTAAAGGAAGAAATCCCGAGAGAACTTACCAACCGCCAGGCACCGAAAACGCAATACACTGGATTTTCGAGACAGGAACTTTTGCAAGACTATGTAAACATCGCTGTCGAATTAGATGGAAAGCCTACATATACCTGTAAGCTATGTCCAAACAAAGTATTTGCTCGACAAGTGTCCATACGAAACCATATGAGAATCCACGAGAATCCGACGTATAAAGAACGCTCGTGCCATGTCTGCCACAAGACGTTCCTTCGGCGCGATACGCTGTTAGTCCACTTAAGGGTTCACAGTGACGAAAGAAAGTACAAATGTGACATTTGCCAGGCCTGCTTCACACATTCCAGTTCCCTAGTCTCGCACAAACGTATCCATACTGGCGAAAAGCCCTACGTCTGCACTATCTGTAGCAAAGCATTTCGCGAATCGGGCCAGCTGACAGCTCACAAAAAGACTCATTTTGAGAAGCTCTTGCAATGTCCAAAATGCGACAAAAAGTTCACCTCCAATAAAACCCTTCGTGGTCACTGTCGCACCCATACCGATGAGCGTCCGTATGCTTGCTCGTTCTGTGCAAAGATGTTTCGTTCAAGTACAAGTCTGACGACTCATCTGCGAGTACACACAGGTGAGAAGCCGTACAAATGCGAGATTTGCTCTTACGCAACAAAACAGTCTGGCTATCTTCGGACGCATATGCGAACTCATACCGGTGAGAGGCCCTACAAATGCTCCTACTGCGACAAGGGATTCTCTGAAAGGAAGCGTCTGGTGACGCACACCCGAAGTCATACGGGTGAACGTCCCTACAAGTGCATATATTGCGATGCGGCTTTCGCTCGGAATGATAATCTCAAGTATCACCTACGAACGCACACCGGTGAGCGGCCATTCGAATGTGCTGATTGCGGAAAACGATTCACCCAACGTACAGCCCTCATTGTTCACCAAAAGATTCACACCGGAGATAAGCCATATTCTTGCCCACATTGCGACATGAATTTCCGCCAAAGTGGGACCTTGGTTACTCATTTGTTGATGCACACAAACGAGCGACCATTTAAATGTGATCTCTGCGAATGTGGATTTAGACAGAGGGCTTTGTTAAAGCGACATGTCACCAGTGCACATGGGGGTGTTATTCATAAGTAG
- Protein Sequence
- MAGELTQIEFSNLVKDANCTFTDWTDDNDVDEDNHINEVLMTEDMIKQEPELLVDLNNPDEEHKIRSFLKKTHVDDEERQHLNWLSCLLCDERFLSTKELSLHVLKHTKSELKEEIPRELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKPTYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRVHSDERKYKCDICQACFTHSSSLVSHKRIHTGEKPYVCTICSKAFRESGQLTAHKKTHFEKLLQCPKCDKKFTSNKTLRGHCRTHTDERPYACSFCAKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGERPFECADCGKRFTQRTALIVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTNERPFKCDLCECGFRQRALLKRHVTSAHGGVIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_00664520;
- 80% Identity
- iTF_01396743;