Msca058339.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456986.1:147403063-147404628[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.23 2.3e+03 0.7 0.1 22 43 213 234 206 239 0.79 2 7 0.003 30 6.7 0.1 21 49 240 267 235 272 0.84 3 7 0.0031 31 6.7 0.4 21 48 295 322 274 326 0.84 4 7 0.00042 4.2 9.5 0.1 21 46 323 348 319 355 0.85 5 7 0.013 1.3e+02 4.7 0.0 21 47 379 405 370 411 0.86 6 7 0.0018 18 7.4 0.1 23 46 437 460 433 466 0.87 7 7 0.00073 7.2 8.7 0.2 21 45 463 487 460 492 0.90
Sequence Information
- Coding Sequence
- atgGCTGGGGAGCTGACACAAATTGAATTCTCAAATATGGTCAAGGACGGCAATTGCACCTTTGCCGACTGGCCAGATGATGACGAGGATGAAGATGACCATATCAATGGAGTTCTCTTGAGTGAAGATATGATCAAACAGGAACCTGAGTTCATAATTGGCTATAACGATCCCAATGAAGAGCACAAAATACGATCTTTccttaaaaaagacaaaatcgACGAGGAGGAGAGACAACAACTCAATTGGCAAACATGTTTGATTTGCGACGAAAGATTTTTATCCACCAAAGAACTGTCTCTTCATGTACAAGAACACACCAAATCGGCTTTGAAGTCAGAAGACCTACCGCCTCCAAAAGAATTAACCAACCGTCAAGCACCGAAAACTCAGTACACTGGGTTCTCCAGGCAGGAATTACTTCAAGACTATGTAAACATAAGCGTCGAATTAGATGGCAAGGCTACGTATACCTGTAAGCTGTGCCCCAATAAAGTGTTTTCCCGACAAGTGTCCATACGAAATCACATGCGAATTCATGAAAATCCAACATACAAAGCACGCTCGTGTCATGTGTGCAACAAGACATTCCTTCGTCGTGATACCCTGTTAGTGCATTTGAGGACGCACAGCGACGAACGAAAATACAAGTGCGACATTTGCGATGCTTGTTTTACACATTCCAGTTCTCTGGTATCGCACAAACGAATCCACTCAGGCGAAAAGCCCTACGTCTGCGCAATTTGTGCGAAAGCTTTTCGAGAGTCCGGTCAGCTTACCGCTCACAGCAAGACCCACTTTGAGAAACTTTTGAAGTGTCCCAAATGCGAAAAGAAGTTTACTTCGAACAAAACTCTTCGTGTACACTGCCGGACGCACACCGATGAGCGTCCATATTCCTGCTCGTACTGCTCAAAGATGTTCCGGAGCAGTACCAGTTTGACTACTCATCTCCGAGTTCACACAGGCGAAAAACCTTACAAATGCGAGATATGCTCGTATGCTACCAAGCAATCCGGTTACCTGAGGACACACATGAGAACCCATACAGGCGAGAAACCCTACCAATGTTTGTACTGCGAGAAGGCCTTTTCGGAGAAGAAACGCCTCGTGACACATACCCGGGGTCACACTGGCGAACGGCCGTACAAGTGCATCTACTGCGATGCAGCATTCGCGCGAAACGACAACCTCAAGTATCATCTACGCACTCATACGGGTGAAAAACCATTCCAGTGTGATGACTGCGGCAAGCGATTCACTCAACGCACTGCGCTGATAATTCACCAAAAAATTCACACTGGAGTCAAGCCGTACTCTTGCCCTCACTGCAACATGAACTTCAGACAAAGTGGAACGTTGGTCACTCATCTGCTGATGCACACAAACGAGCGACCATTCAAATGTGACCTTTGTGAGAGCGGATTCAGACAGCGAGCTTTACTGAGAAGACACGTTGCCAGTGTTCACGGAGATACCGTTAAGACATATGCCAAGACCAGATTGGACCAGCAACCAGCATCAGCCTCCacaccagcaacaacaacaccgACTGAAATTTTGTAA
- Protein Sequence
- MAGELTQIEFSNMVKDGNCTFADWPDDDEDEDDHINGVLLSEDMIKQEPEFIIGYNDPNEEHKIRSFLKKDKIDEEERQQLNWQTCLICDERFLSTKELSLHVQEHTKSALKSEDLPPPKELTNRQAPKTQYTGFSRQELLQDYVNISVELDGKATYTCKLCPNKVFSRQVSIRNHMRIHENPTYKARSCHVCNKTFLRRDTLLVHLRTHSDERKYKCDICDACFTHSSSLVSHKRIHSGEKPYVCAICAKAFRESGQLTAHSKTHFEKLLKCPKCEKKFTSNKTLRVHCRTHTDERPYSCSYCSKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGEKPYQCLYCEKAFSEKKRLVTHTRGHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPFQCDDCGKRFTQRTALIIHQKIHTGVKPYSCPHCNMNFRQSGTLVTHLLMHTNERPFKCDLCESGFRQRALLRRHVASVHGDTVKTYAKTRLDQQPASASTPATTTPTEIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_00976734;
- 80% Identity
- iTF_00976734;