Eeli005568.1
Basic Information
- Insect
- Epistrophe eligans
- Gene Symbol
- -
- Assembly
- GCA_951394125.1
- Location
- OX596028.1:88030379-88031866[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.24 1.5e+03 -0.1 0.1 22 43 212 233 205 238 0.80 2 7 0.0018 12 6.6 0.1 21 49 239 266 234 269 0.85 3 7 0.0017 11 6.8 0.2 21 46 294 319 273 322 0.86 4 7 0.00097 6.3 7.5 0.1 21 45 322 346 319 354 0.89 5 7 0.025 1.6e+02 3.0 0.1 20 45 377 402 370 409 0.83 6 7 0.00093 6.1 7.6 0.0 22 45 435 458 431 462 0.89 7 7 0.0041 27 5.5 0.2 21 46 462 487 459 490 0.89
Sequence Information
- Coding Sequence
- ATGACTGGCGAGTTCACACAAATCGAATTCTCAAATTTGGTCAAGGACGGCAACTGCACCTTCACCGACTGGCCAGACGAGAACGACGTAGATGAAGACAGTCGTCACGTTAATGAAGTTCTCATGACCGAGGATATGATCAAGCAAGAACCAGAATTATTAGTTGACTTAAATAACCCCGATGAGGAGCATAAAATACGttcgtttcttaaaaaaaccaaAGTCGATGACGAGGAGAGAAAACAACTCAATTGGCTAACTTGCCTGCTCTGCGATGAGCGTTTTTTATCCACCAAAGAACTGTCACTTCATGTGTTAGACCACACAAAATCCGAATTGAAAGAAGATCTCCCCAAGGAACTAACCAACCGTCAAGCACCGAAAACTCAATATACTGGATTCTCGAGACAGGAACTACTGCAAGACTATGTAAATATTGCCGTCGAGCTTGATGGAAAGGCTACATATACCTGCAAACTTTGTCCCAATAAAGTGTTTGCGCGACAAGTGTCCATACGGAATCACATGAGAATCCACGAAAATCCCACATATAAGGAACGCTCGTGCCATGTCTGCCACAAGACTTTCCTTAGACGAGATACTTTGTTGGTTCACTTAAGAGTTCACAGCGATGAACGAAAGTACAAATGTGAAATTTGCGATGCTTCCTTCACACATTCCAGTTCCCTGGTCTCCCATAAACGCATCCACACTGGCGAAAAGCCTTACGTGTGTTCTATCTGTAGCAAAGCGTTTCGTGAGTCTGGTCAGCTAACAGCCCACAAAAAGACCCATTTTGAGAAGCTTTTGCAGTGTCCAAAATGCGACAAGAAGTTCACCTCCAATAAGACACTTCGCGGCCACTGCCGTACGCATACCGATGAGCGTCCTTATGCGTGCTCCTTCTGTGCAAAGATGTTTCGTTCCAGTACAAGTCTGACAACTCATTTGCGTGTGCACACAGGTGAGAAGCCGTACAAATGCGAGATATGCTCCTATGCGACCAAACAGTCCGGTTACATGCGGACCCACATGCGAACCCATACCGGTGAGAGACCCTACAAATGCTCCTACTGCGACAAGGGATTCTCGGAGAGGAAGCGTCTGGTGACGCACACCCGAAGTCATACGGGTGAACGTCCATACAAATGCATATATTGCGATTCGGCATTCGCTCGGAATGATAACCTCAAGTATCACCTGCGAACGCACACCGGTGAACGGCCATTCGAATGTGCTGATTGTGGAAAACGTTTTACCCAACGTACAGCACTTCTAGTTCATCAGAAGATACATACCGGCGATAAGCCCTATTCTTGCCCCCATTGCGATATGAATTTCCGCCAAAGCGGAACCTTGGTCACTCATTTGTTGATGCACACAAACGAGCGACCATTTAAGTGTGATCTCTGCGAAAGGGGTTTTAGACAGAGGGCTTTGCTAAAACGACATGTCGCTAGTGCACATGGGGGTATTATTGataattag
- Protein Sequence
- MTGEFTQIEFSNLVKDGNCTFTDWPDENDVDEDSRHVNEVLMTEDMIKQEPELLVDLNNPDEEHKIRSFLKKTKVDDEERKQLNWLTCLLCDERFLSTKELSLHVLDHTKSELKEDLPKELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKATYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRVHSDERKYKCEICDASFTHSSSLVSHKRIHTGEKPYVCSICSKAFRESGQLTAHKKTHFEKLLQCPKCDKKFTSNKTLRGHCRTHTDERPYACSFCAKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYMRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARNDNLKYHLRTHTGERPFECADCGKRFTQRTALLVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTNERPFKCDLCERGFRQRALLKRHVASAHGGIIDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_00664269; iTF_00975266; iTF_01396743; iTF_00427755; iTF_01396983; iTF_00665048; iTF_00974971; iTF_00427488; iTF_00694867; iTF_00694261; iTF_00695126; iTF_00694014; iTF_00335288; iTF_00335521;
- 80% Identity
- iTF_00664269;