Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:64772313-64773797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.31 47 5.8 0.4 2 23 86 107 85 107 0.95

2 13 0.00011 0.017 16.6 0.5 1 23 155 178 155 178 0.98

3 13 0.00055 0.082 14.4 4.1 2 23 187 208 187 208 0.97

4 13 1e-05 0.0015 19.9 4.4 1 23 214 236 214 236 0.99

5 13 1.1e-06 0.00017 22.9 0.5 1 23 242 264 242 264 0.99

6 13 0.00012 0.018 16.5 4.6 2 23 270 291 269 291 0.96

7 13 9.5e-06 0.0014 20.0 1.2 1 23 297 319 297 319 0.98

8 13 1.2e-06 0.00018 22.8 1.4 1 23 325 347 325 347 0.99

9 13 2e-05 0.003 19.0 2.5 1 23 353 375 353 375 0.99

10 13 5.8e-06 0.00087 20.7 0.6 1 23 381 403 381 403 0.98

11 13 2.2e-07 3.2e-05 25.1 0.2 1 23 409 431 409 431 0.98

12 13 3.4e-06 0.00051 21.4 1.0 1 23 437 459 437 459 0.98

13 13 0.00015 0.022 16.2 1.7 1 23 465 488 465 488 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.31	47	5.8	0.4	2	23	86	107	85	107	0.95
2	13	0.00011	0.017	16.6	0.5	1	23	155	178	155	178	0.98
3	13	0.00055	0.082	14.4	4.1	2	23	187	208	187	208	0.97
4	13	1e-05	0.0015	19.9	4.4	1	23	214	236	214	236	0.99
5	13	1.1e-06	0.00017	22.9	0.5	1	23	242	264	242	264	0.99
6	13	0.00012	0.018	16.5	4.6	2	23	270	291	269	291	0.96
7	13	9.5e-06	0.0014	20.0	1.2	1	23	297	319	297	319	0.98
8	13	1.2e-06	0.00018	22.8	1.4	1	23	325	347	325	347	0.99
9	13	2e-05	0.003	19.0	2.5	1	23	353	375	353	375	0.99
10	13	5.8e-06	0.00087	20.7	0.6	1	23	381	403	381	403	0.98
11	13	2.2e-07	3.2e-05	25.1	0.2	1	23	409	431	409	431	0.98
12	13	3.4e-06	0.00051	21.4	1.0	1	23	437	459	437	459	0.98
13	13	0.00015	0.022	16.2	1.7	1	23	465	488	465	488	0.96

Sequence Information

Coding Sequence: atggctGGCGAGTTAACACAAATCGAATTCTCAAATTTGGTCAAGGACGCCAACTGCACCTTCACCGACTGGACAGACGACAACGACGTGGACGAAGATAATCACATAAATGAAGTTCTCATGACGGAAGACATGATCAAACAAGAGCCAGAGTTATTGGTTGATCTAAATAACCCAGATGAGGAGCATAAAATACGTTCGTTCCTTAAGAAAACTCACGTCGATGACGAGGAGAGACAACATCTCAATTGGCTTTCATGTTTACTCTGTGATGAGCGTTTTCTATCCACCAAAGAACTGTCCCTACATGTGCTGAAACACACGAAATCCGAATTAAAGGAAGAAATCCCGAGAGAACTTACCAACCGCCAGGCACCGAAAACGCAATACACTGGATTTTCGAGACAGGAACTTTTGCAAGACTATGTAAACATCGCTGTCGAATTAGATGGAAAGCCTACATATACCTGTAAGCTATGTCCAAACAAAGTATTTGCTCGACAAGTGTCCATACGAAACCATATGAGAATCCACGAGAATCCGACGTATAAAGAACGCTCGTGCCATGTCTGCCACAAGACGTTCCTTCGGCGCGATACGCTGTTAGTCCACTTAAGGGTTCACAGTGACGAAAGAAAGTACAAATGTGACATTTGCCAGGCCTGCTTCACACATTCCAGTTCCCTAGTCTCGCACAAACGTATCCATACTGGCGAAAAGCCCTACGTCTGCACTATCTGTAGCAAAGCATTTCGCGAATCGGGCCAGCTGACAGCTCACAAAAAGACTCATTTTGAGAAGCTCTTGCAATGTCCAAAATGCGACAAAAAGTTCACCTCCAATAAAACCCTTCGTGGTCACTGTCGCACCCATACCGATGAGCGTCCGTATGCTTGCTCGTTCTGTGCAAAGATGTTTCGTTCAAGTACAAGTCTGACGACTCATCTGCGAGTACACACAGGTGAGAAGCCGTACAAATGCGAGATTTGCTCTTACGCAACAAAACAGTCTGGCTATCTTCGGACGCATATGCGAACTCATACCGGTGAGAGGCCCTACAAATGCTCCTACTGCGACAAGGGATTCTCTGAAAGGAAGCGTCTGGTGACGCACACCCGAAGTCATACGGGTGAACGTCCCTACAAGTGCATATATTGCGATGCGGCTTTCGCTCGGAATGATAATCTCAAGTATCACCTACGAACGCACACCGGTGAGCGGCCATTCGAATGTGCTGATTGCGGAAAACGATTCACCCAACGTACAGCCCTCATTGTTCACCAAAAGATTCACACCGGAGATAAGCCATATTCTTGCCCACATTGCGACATGAATTTCCGCCAAAGTGGGACCTTGGTTACTCATTTGTTGATGCACACAAACGAGCGACCATTTAAATGTGATCTCTGCGAATGTGGATTTAGACAGAGGGCTTTGTTAAAGCGACATGTCACCAGTGCACATGGGGGTGTTATTCATAAGTAG
Protein Sequence: MAGELTQIEFSNLVKDANCTFTDWTDDNDVDEDNHINEVLMTEDMIKQEPELLVDLNNPDEEHKIRSFLKKTHVDDEERQHLNWLSCLLCDERFLSTKELSLHVLKHTKSELKEEIPRELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKPTYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRVHSDERKYKCDICQACFTHSSSLVSHKRIHTGEKPYVCTICSKAFRESGQLTAHKKTHFEKLLQCPKCDKKFTSNKTLRGHCRTHTDERPYACSFCAKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGERPFECADCGKRFTQRTALIVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTNERPFKCDLCECGFRQRALLKRHVTSAHGGVIHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00975266;
90% Identity: iTF_00664520;
80% Identity: iTF_01396983;