Spyr015603.1
Basic Information
- Insect
- Scaeva pyrastri
- Gene Symbol
- -
- Assembly
- GCA_905146935.1
- Location
- LR989927.1:69040053-69041540[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.1 1.1e+03 0.6 0.0 22 46 212 236 205 242 0.78 2 7 0.0013 14 6.7 0.1 21 49 239 266 232 269 0.86 3 7 0.0016 17 6.4 0.2 21 48 294 321 273 325 0.83 4 7 0.00091 9.8 7.2 0.1 21 46 322 347 319 354 0.85 5 7 0.019 2e+02 3.0 0.1 20 45 377 402 370 409 0.83 6 7 0.0002 2.2 9.3 0.0 21 45 434 458 430 461 0.90 7 7 0.00041 4.4 8.3 0.7 21 46 462 487 459 491 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGTTAACACACATTGAGTTCTCTAATTTGGTCAAGGACGGCAACTGCACCTTCACTGACTGGTCAGACAACAAAGATGTAAATAATGAAGAAAGCCATATCAATGGAGTTCTAATGACAGAGGACATGATCAAGCAAGAGCCAGAGTTATTAGTTGAATTAAATAGCCCGGACGAGGAGCAAAAGATACGTTCTTTCCTAAAGAAATCTGTTGTAGATGACGAAGAGCGACAACAACTCAATTGGCTTGCCTGTTTAGTCTGTGATGAACGCTTTTTATCCACCAAAGAACTTTCACTGCATGTGCTGGAGCACACAAAATCAGAATATAAAGAAGATTTCCCTAAGGAACTTACAAATCGCCAAGCTCCGAAAACTCAATACACGGGGTTCTCGAGGCAGGAACTGCTGCAAGACTATGTGAACATTGCTGTCGAGCTGGACGGAAAGGTTACATACACATGCAAACTTTGCCCGAATAAAGTTTTTGCCCGGCAAGTCTCCATACGAAACCACATGAGAATCCACGAGAACCCAACATACAAAGAACGTTCTTGCCATATTTGCCACAAGACATTCCTTCGGCGAGACACGCTGTTGGTGCACTTAAGGGTTCACAGCGATGAACGAAAGTACAAATGTGACATTTGCGATGCCTCCTTCACACATTCCAGTTCACTGGTATCCCACAAACGCATCCACACAGGTGAGAAGCCCTATGTGTGTACTATTTGCAGCAAAGCGTTTCGCGAATCTGGCCAGCTCGCGGCTCACAGGAAGATCCATTTTGAGAAGCTTTTACAATGCCCAAAATGTGATAAGAAGTTTACGACCAATAAGACTCTTCGCGGCCACTGCCGCACGCATACCGATGAACGCCCTTATGCGTGCACGTACTGTTCAAAGCTGTTCCGTTCCAGTACGGGTCTGACTACTCATCTGCGGGTACATACAGGTGAGAAGCCGTACAAATGCGAGTTATGCTCTTACGCGACCAAACAGTCCGGATACCTACGGACACACATGCGAACCCACACTGGTGAAAAACCCTACAAATGCAACTACTGTGACAAGGGATTTTCGGAGAGAAAGCGTCTCGTGACACACACTCGAAGTCATACAGGTGAACGCCCTTATAAGTGTATATATTGCGATTCGGCATTCGCTCGGAATGATAACCTCAAGTATCACCTACGAACGCACACCGGTGAGCGACCATTCGAATGTGATGATTGTGGAAAAAGATTTACCCAACGTACAGCATTAATTGTTCATCAAAAGATTCACACCAACGAAAAGCCATATTCTTGCCCCCATTGCGACATGAACTTCCGCCAGAGTGGAACCTTGGTCACTCATTTGTTGATGCACTCAAACGAGCGACCATTTAAATGTGACCTCTGTGAAAGGGCGTTCAGACAGAGGGTTTTGTTAAGACGACACATCGCCAATGCACATGGGGGCGTTTCACTTAATTAG
- Protein Sequence
- MAGELTHIEFSNLVKDGNCTFTDWSDNKDVNNEESHINGVLMTEDMIKQEPELLVELNSPDEEQKIRSFLKKSVVDDEERQQLNWLACLVCDERFLSTKELSLHVLEHTKSEYKEDFPKELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKVTYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHICHKTFLRRDTLLVHLRVHSDERKYKCDICDASFTHSSSLVSHKRIHTGEKPYVCTICSKAFRESGQLAAHRKIHFEKLLQCPKCDKKFTTNKTLRGHCRTHTDERPYACTYCSKLFRSSTGLTTHLRVHTGEKPYKCELCSYATKQSGYLRTHMRTHTGEKPYKCNYCDKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARNDNLKYHLRTHTGERPFECDDCGKRFTQRTALIVHQKIHTNEKPYSCPHCDMNFRQSGTLVTHLLMHSNERPFKCDLCERAFRQRVLLRRHIANAHGGVSLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_01318425;
- 80% Identity
- iTF_01318425;