Basic Information

Insect: Baccha elongata
Gene Symbol: -
Assembly: GCA_951217065.1
Location: OX578273.1:9248403-9249896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.4 84 5.6 0.3 2 23 86 107 85 107 0.94

2 13 0.00064 0.13 14.4 0.5 1 23 158 181 158 181 0.98

3 13 0.00097 0.21 13.8 2.4 3 23 191 211 190 211 0.98

4 13 2.1e-06 0.00045 22.1 2.0 1 23 217 239 217 239 0.99

5 13 5.2e-06 0.0011 20.9 0.3 1 23 245 267 245 267 0.98

6 13 0.00023 0.049 15.7 5.1 2 23 273 294 272 294 0.96

7 13 5.7e-06 0.0012 20.8 2.4 1 23 300 322 300 322 0.98

8 13 9.9e-06 0.0021 20.0 1.5 1 23 328 350 328 350 0.99

9 13 0.00028 0.058 15.5 2.3 1 23 356 378 356 378 0.99

10 13 2.2e-05 0.0047 19.0 1.0 1 23 384 406 384 406 0.98

11 13 8.3e-08 1.8e-05 26.6 0.3 1 23 412 434 412 434 0.98

12 13 1.2e-06 0.00025 23.0 1.1 1 23 440 462 440 462 0.98

13 13 6.5e-06 0.0014 20.6 0.3 1 23 468 491 468 491 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.4	84	5.6	0.3	2	23	86	107	85	107	0.94
2	13	0.00064	0.13	14.4	0.5	1	23	158	181	158	181	0.98
3	13	0.00097	0.21	13.8	2.4	3	23	191	211	190	211	0.98
4	13	2.1e-06	0.00045	22.1	2.0	1	23	217	239	217	239	0.99
5	13	5.2e-06	0.0011	20.9	0.3	1	23	245	267	245	267	0.98
6	13	0.00023	0.049	15.7	5.1	2	23	273	294	272	294	0.96
7	13	5.7e-06	0.0012	20.8	2.4	1	23	300	322	300	322	0.98
8	13	9.9e-06	0.0021	20.0	1.5	1	23	328	350	328	350	0.99
9	13	0.00028	0.058	15.5	2.3	1	23	356	378	356	378	0.99
10	13	2.2e-05	0.0047	19.0	1.0	1	23	384	406	384	406	0.98
11	13	8.3e-08	1.8e-05	26.6	0.3	1	23	412	434	412	434	0.98
12	13	1.2e-06	0.00025	23.0	1.1	1	23	440	462	440	462	0.98
13	13	6.5e-06	0.0014	20.6	0.3	1	23	468	491	468	491	0.96

Sequence Information

Coding Sequence: atggCTGGCGAGTTGACTGAAATCGAATTCTCAAATTTGGTCAAGGACGGCAACTGCACCTTCACTGACTGGCCAGACGAAGAATATGATGGCGAAGATGATCATATGAACGGAGTTCTTATGACCGATGACATGATTAAGCAAGAACCAGAATTATTAGTTGACTTGAATAATCCCGAGGAAGAGCACAAGATTCGTTCGTTTCTCAAGAAAACAACCGTCAATGATCAAGAGAGAAAACAACTAAATTGGCTAACATGTTTGCTATGCGATGAACGTTTCTTGTCAACTAAAGAACTTTCTCTTCACGTACAAGAGCACACAAAGTCCGAATTTAAGGAAGAAGATGTACCACCTCCAAAAGAACTTACCAACCGTCAAGCACCGAAAACTCAATATACTGGTTTCTCGAGACAAGAACTCTTACAAGACTATGTGAATATTTCTGTTGAGTTAGATGGGAAAACTACATATACCTGCAAACTGTGTCCCAACAAAATATTCGCCCGACAGATATCTATAAGGAATCACATGAGAATCCATGAGAACCCCACCTACAAAGAACGTGCATGCCATGTGTGCCACAAAATATTTCTTCGGCGAGACACGCTCTTGGTGCACTTGAGAGTTCATAGCAACGAACGAAATTATAAATGTGATGTATGCGGATCCACCTTTTCACATTCCAGTTCCCTAGTATCACACAAGCGGATCCACAGCGGAGAAAAACCATACGTTTGCACTATTTGCGCAAAGTCTTTTCGCGAGTCTGGGCAACTAACCGCTCACAAGAAGATCCACTTCGAAAAGCACTTGCAATGCCCTAAATGCGAGAAGAAATTTACATCTAATAAGACACTTCGTCTCCACTGCCGAACACACACAGACGAGCGTCCGTATTCCTGCTCGTACTGTTCAAAATTGTTCCGCTCAAGTACAAGCTTGACGACTCATCTGCGAGTACATACAGGAGAGAAACCGTACAAATGCGAAATTTGTTCTTATGCGACCAAACAGTCTGGTTATATGCGGACGCACATGCGAACCCACACGGGTGAGAGACCCTACAAATGCATGTACTGCGAAAAGGGTTTCTCGGAAAGGAAGCGTCTGGTGACGCACACTCGAAGTCATACGGGTGAACGTCCATATAAGTGCATTTACTGCGATTCGGCTTTCGCTCGGAATGATAACCTAAAGTATCACCTGCGAACCCACACCGGCGAGCGACCATTCGAATGCGATGATTGCGGCAAGCGATTTACCCAACGCACTGCACTTATCGTCCACCAAAAAATTCACACCGGTGCCAAGCCGTATTCTTGCCCCCACTGCGACATGACCTTCCGCCAAAGTGGTACTTTGGTCACACATTTATTGATGCACACCAACGAACGACCATTTAAGTGTGATCTATGCGAAAGAGCGTTCCGACAGAGAGCTTTGCTGAAAAGACATGTCGCCAGTGCACATGGGAGTATTATTATTAAGTAG
Protein Sequence: MAGELTEIEFSNLVKDGNCTFTDWPDEEYDGEDDHMNGVLMTDDMIKQEPELLVDLNNPEEEHKIRSFLKKTTVNDQERKQLNWLTCLLCDERFLSTKELSLHVQEHTKSEFKEEDVPPPKELTNRQAPKTQYTGFSRQELLQDYVNISVELDGKTTYTCKLCPNKIFARQISIRNHMRIHENPTYKERACHVCHKIFLRRDTLLVHLRVHSNERNYKCDVCGSTFSHSSSLVSHKRIHSGEKPYVCTICAKSFRESGQLTAHKKIHFEKHLQCPKCEKKFTSNKTLRLHCRTHTDERPYSCSYCSKLFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYMRTHMRTHTGERPYKCMYCEKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARNDNLKYHLRTHTGERPFECDDCGKRFTQRTALIVHQKIHTGAKPYSCPHCDMTFRQSGTLVTHLLMHTNERPFKCDLCERAFRQRALLKRHVASAHGSIIIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00975266;
90% Identity: -
80% Identity: -