Ecor010228.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000114.1:1767912-1769390[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.19 2e+03 -0.2 0.0 22 52 210 240 203 242 0.78 2 7 0.0016 17 6.5 0.1 21 49 237 264 231 267 0.84 3 7 0.0024 26 5.9 0.2 21 48 292 319 271 323 0.83 4 7 0.00024 2.6 9.1 0.1 21 45 320 344 316 352 0.89 5 7 0.015 1.6e+02 3.3 0.1 20 45 375 400 368 407 0.83 6 7 0.00023 2.5 9.1 0.0 21 45 432 456 428 459 0.90 7 7 0.0022 24 6.0 0.1 21 45 460 484 457 489 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGTTAACACAAATCGGATTCTCTAATTTGGTCAAGGACGGCAGTTGCAGCTTCACCGACTGGCCAGACGACGATATAGACAACGAAAGTCACATCAATGGAGTCATCATGACAGAGGACATGATCAAGCAAGAACCAGAGTTAGTAGTTGACTTAAATAATCCCGACGAGGAGCATAAAATTCGCTCGTTCCTCAAGAAGACCATTGTCGATGATGAGGAGCGACAACAACTCAATTGGCTTACCTGTTTGGTCTGTGATGAACGCTTTCTGACTACCAAAGAACTTTCCCTGCATGTGTTGGAGCATACAAAAACCGAATCTAAAGACGATATCCCCAAGGAGCTGACAAACCGACAAGCACCGAAAACTCAATACACGGGATTTTCGAGACAGGAACTCCTGCAAGACTACGTTAACATTGCCGTCGAGCTGGACGGAAAGGCTACTTACACCTGCAAACTATGTCCGAATAAAGTTTTCGCACGACAAGTTTCGATACGAAATCATATGAGAATCCACGAGAATCCAACTTACAAGGAACGCTCTtgccatatctgccataagacgttccttcggcgagatacgctgctggtccacttaagggttcacagcgacgaacgaaagtacaaatgtgacgtttgtgatgcttccttcacacattccagttccctggtctcgcacaaacgcatccacactggtgagaagccgtatgtgtgtacgatttgtagcaaagcgtttcgcgaatctggacagctcgcggcccacaagaaaactcattttgagaagcttttgcaatgccccaaatgcgacaagaagtttaccaccaataagactcttcgcggccactgccgcacgcataccgatgaacgcccgtatgcgtgctcctactgcgcaaagacgtttcgttcaagtacgggtctgacaactcatctgcgggtacacacaggtgagaaaccgtacaaatgcgagatatgctcctacgctaccaaacagtccggatacctgcggacgcacatgcgaacccataccggcgagaggccctacaagtgctcctactgtgacaaggggttctcggagaggaagcgtctagtgacacacacccgaagtcatacgggtgaacgtccctacaaatgtatatattgcgattcggcattcgctcgcactgataacctcaaatatcacctgcgaactcacaccggtgagcggcccttcgaatgtgttgattgtggaaaacgatttacccaacgtacagctttaattgtccatcaaaagattcacaccgacgaaaagccatattcttgtccccattgtgacatgaacttccgccagagcgggaccttggtcactcatttgttgatgcactcgaacgagcgaccattcaaatgtgatctctgcgaaatgggattcAGACAGAGGGCATTGCTGAAGCGACATGTTGCCAGAGTACACGGGGATGGGGGTATCTAA
- Protein Sequence
- MAGELTQIGFSNLVKDGSCSFTDWPDDDIDNESHINGVIMTEDMIKQEPELVVDLNNPDEEHKIRSFLKKTIVDDEERQQLNWLTCLVCDERFLTTKELSLHVLEHTKTESKDDIPKELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKATYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHICHKTFLRRDTLLVHLRVHSDERKYKCDVCDASFTHSSSLVSHKRIHTGEKPYVCTICSKAFRESGQLAAHKKTHFEKLLQCPKCDKKFTTNKTLRGHCRTHTDERPYACSYCAKTFRSSTGLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARTDNLKYHLRTHTGERPFECVDCGKRFTQRTALIVHQKIHTDEKPYSCPHCDMNFRQSGTLVTHLLMHSNERPFKCDLCEMGFRQRALLKRHVARVHGDGGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_00664520;
- 80% Identity
- iTF_00694014;