Cfes022984.1
Basic Information
- Insect
- Chrysotoxum festivum
- Gene Symbol
- -
- Assembly
- GCA_963931855.1
- Location
- OZ007555.1:37876198-37877679[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.3 3.8e+03 -0.1 0.1 22 43 210 231 204 235 0.79 2 7 0.0015 20 7.2 0.1 21 49 237 264 230 267 0.86 3 7 0.00026 3.3 9.7 0.3 21 46 292 317 271 320 0.86 4 7 0.00044 5.7 8.9 0.1 21 45 320 344 318 352 0.89 5 7 0.031 4e+02 3.0 0.1 20 45 375 400 368 407 0.83 6 7 0.0012 15 7.6 0.0 22 45 433 456 429 460 0.89 7 7 0.0048 62 5.6 0.2 21 46 460 485 457 489 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGTTAACACAGATCGAATTCTCCAATTTGGTCAAGGACGGCAACTGCACCTTCTCCGACTGGCCAGAGGATGATATTGATGACGATAGTAACATCGATGGAGTTCTCATGACCGAGGATATGATCAAGCAAGAGCCCGAGTTATTAGTTGACTTAAATAACCCAGATGAGGAGCATAAAATACGTTCGTTCCTCAAGAAAACCAACGTCGATGACATGGAGAGACAACAACTCAATTGGCTTACTTGTCTATTATGCGAGGAACGTTTTCTATCTACTAAAGAACTATCACTTCATGTACTAGATCACACAAAATCCGAATTGAAGGAAGATTTCCCAAAAGAACTTACAAACCGACAAGCACCTAAAACGCAATACACTGGATTCTCGAGGCAAGAACTACTTCAAGACTATGTAAACATTGCCGTTGAGCTAGATGGAAAGCCTACATATACCTGTAAGCTCTGTCCGAATAAAGTATTTGCCCGACAGGTGTCGATACGGAACCACATGAGAATCCACGAAAATCCCACGTATAAAGAACGCTCGTGTCATGTGTGCAACAAGACATTCCTTCGGCGAGATACGCTGTTGGTACACTTAAGGGTTCACAGCGACGAACGAAAGTACAAATGTGACATTTGCGAGGCTTCCTTCACACATTCCAGTTCCCTGGTCTCGCACAAACGCATCCATACTGGCGAAAAACCCTATGTTTGTTCTATCTGTAACAAGGCGTTTCGCGAATCTGGCCAGCTTACGGCTCACCGAAAGATCCATTTTGAGAAACTCTTGCAATGCCCTAAATGCGACAAGAAGTTCACCTCCAATAAGACCCTTCGCGGTCACTGCCGTACCCATACCGATGAGCGTCCGTATGCGTGTTCAATCTGTGCAAAGATGTTTCGTTCCAGTACGAGTCTGACGACACATCTCCGAGTGCACACAGGTGAGAAGCCGTATAAATGCGAGATATGCTCTTACGCCACCAAACAGTCCGGCTACCTGCGCACGCACATGAGGACACATACTGGTGAGAGACCATATAAATGCTCTTACTGCGACAAGGGATTCTCGGAGCGAAAACGTCTGGTGACCCACACCCGAAGTCATACGGGTGAACGGCCGTACAAATGCATATATTGCGATTCGGCATTCGCTCGAAATGATAACCTCAAGTACCACCTGCGAACGCACACCGGTGAACGACCATTCGAATGTGCTGATTGTGGTAAACGATTTACCCAACGTACAGCACTTCTCGTTCACCAAAAAATTCATACCGGCGATAAGCCCTACTCTTGCCCCCATTGCGACATGAATTTCCGACAGAGCGGGACTTTGGTCACTCATTTGTTGATGCACACAAACGAGCGTCCATTTAAGTGTGATCTCTGTGAAAGGGGGTTTAGGCAAAGGGCTCTTTTGAAGCGACATGTCGCCAGTGCTCATGGGGGTGTTATTGTTAAGTAG
- Protein Sequence
- MAGELTQIEFSNLVKDGNCTFSDWPEDDIDDDSNIDGVLMTEDMIKQEPELLVDLNNPDEEHKIRSFLKKTNVDDMERQQLNWLTCLLCEERFLSTKELSLHVLDHTKSELKEDFPKELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKPTYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCNKTFLRRDTLLVHLRVHSDERKYKCDICEASFTHSSSLVSHKRIHTGEKPYVCSICNKAFRESGQLTAHRKIHFEKLLQCPKCDKKFTSNKTLRGHCRTHTDERPYACSICAKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARNDNLKYHLRTHTGERPFECADCGKRFTQRTALLVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTNERPFKCDLCERGFRQRALLKRHVASAHGGVIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00975266;
- 90% Identity
- iTF_00664520;
- 80% Identity
- iTF_00335288;