Basic Information

Gene Symbol
-
Assembly
GCA_963921185.1
Location
OY992530.1:247878837-247880321[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.21 4.2e+03 0.0 0.0 22 43 211 232 204 237 0.80
2 7 0.0014 28 7.0 0.1 21 49 238 265 232 268 0.86
3 7 0.0021 42 6.5 0.2 21 46 293 318 272 321 0.86
4 7 0.00035 7 8.9 0.1 21 45 321 345 319 353 0.89
5 7 0.016 3.2e+02 3.6 0.0 20 47 376 403 369 409 0.80
6 7 0.00093 18 7.6 0.0 22 45 434 457 430 461 0.89
7 7 0.0039 77 5.6 0.2 21 46 461 486 458 490 0.89

Sequence Information

Coding Sequence
ATGGCTGGCGAGTTAACACAAATCGAATTCTCTAATTTGGTCAAGGACGGCAACTGCACCTTCACCGACTGGCCAGACGACAACGATGTGGATGAAGATAGTCAAATCGAGGGCGTTCTCATGACCGAGGACATGATCAAGCAAGAGCCAGAGTTATTAGTTGACTTAAATAACCCAGATGAGGAGCATAAAATACGTTCGTTTCTCAAAAAAACCAACGTTGGTGACGAGGAGAGACAAAAACTCAATTGGCTTACGTGTTTGCTCTGCGATGAGCGTTTTCTAACTACCAAAGAATTATCTCTTCATGTGCTAGAGCACACGAAATCTGAATTGAAAGAAGATCTCCCAAAAGAACTTACCAATCGTCAAGCACCGAAGACTCAATACACTGGGTTCTCGAGGCAGGAGCTACTGCAGGACTATGTCAACATCGCCGTCGAGCTCGATGGAAAGGCTACATATACTTGCAAACTTTGTCCTAATAAAGTATTTGCGCGACAGGTGTCCATACGGAACCACATGAGAATCCACGAAAATCCCACTTATAAAGAACGCTCGTGTCATGTCTGCCACAAGACGTTCCTTCGTCGAGATACTCTGTTGGTCCACTTAAGGGTTCACAGCGACGAACGAAAGTACAAATGTGACATTTGCGAGGCCTCCTTCACACATTCCAGTTCCCTGGTCTCGCACAAACGTATCCACACTGGCGAAAAGCCCTATGTGTGTTCTATTTGCAGTAAAGCGTTTCGCGAGTCTGGCCAGCTAACGGCTCACAAGAAGATCCATTTTGAAAAGCTTTTGCaatgccccaaatgcgacaagaAGTTCACCTCCAACAAAACCCTTCGCGGTCACTGCCGTACGCACACGGATGAGCGTCCGTATGCGTGTAAGTTCTGTGCAAAGATGTTTCGTTCGAGTACGAGTCTGACGACACATTTGCGTGTGCATACAGGTGAGAAGCCGTACAAATGCGAGATATGCTCCTACGCGACCAAACAGTCTGGCTACTTGCGGACGCACATGAGAACCCATACCGGCGAGAGACCCTACAAATGCTCCTACTGCGACAAGGGATTCTCGGAAAGGAAGCGTCTAGTGACGCACACCCGAAGTCATACGGGTGAACGCCCGTACAAGTGCATATATTGCGATTCAGCATTCGCTCGAAATGATAACCTCAAGTACCACCTGCGAACGCATACCGGTGAGAAGCCATTCGAATGTGCTGATTGTGGAAAACGATTTACCCAGCGTACAGCACTCATCGTTCACCAAAAGATTCATACCGGTGATAAGCCCTATTCTTGCCCCCACTGCGACATGAATTTCCGCCAGAGCGGGACCTTGGTCACTCATTTGTTGATGCACACAAACGAGCGACCATTTAAGTGTGATCTCTGCGAAAGAGGATTTAGGCAGAGGGCTTTGTTGAAACGACATGTCGCCAGTGCGCATGGGGGTGTTATTAATaagtag
Protein Sequence
MAGELTQIEFSNLVKDGNCTFTDWPDDNDVDEDSQIEGVLMTEDMIKQEPELLVDLNNPDEEHKIRSFLKKTNVGDEERQKLNWLTCLLCDERFLTTKELSLHVLEHTKSELKEDLPKELTNRQAPKTQYTGFSRQELLQDYVNIAVELDGKATYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRVHSDERKYKCDICEASFTHSSSLVSHKRIHTGEKPYVCSICSKAFRESGQLTAHKKIHFEKLLQCPKCDKKFTSNKTLRGHCRTHTDERPYACKFCAKMFRSSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCSYCDKGFSERKRLVTHTRSHTGERPYKCIYCDSAFARNDNLKYHLRTHTGEKPFECADCGKRFTQRTALIVHQKIHTGDKPYSCPHCDMNFRQSGTLVTHLLMHTNERPFKCDLCERGFRQRALLKRHVASAHGGVINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00975266;
90% Identity
iTF_00664520;
80% Identity
iTF_00427488;