Hcon021109.1
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- -
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000242.1:8494858-8506889[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 2.5e-08 33.9 0.0 1 40 561 601 561 604 0.90 2 4 6.6e-14 1.4e-10 41.2 0.1 2 39 616 653 615 656 0.94 3 4 1.5e-17 3.2e-14 52.8 0.0 1 45 670 715 670 715 0.98 4 4 1.6e-19 3.3e-16 59.2 0.0 1 43 722 765 722 766 0.97
Sequence Information
- Coding Sequence
- ATGCGCTGCCCATTTGCCAACTGGGCTGGTCTGCTACGCACCGCGgaacaattgaaaatcaagGGCCTCTGTGAGCCGGCTGAGAATGCGGATGATTTGAATGACGCTGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTAGGCAACATTGTGAATGCGAGCCTAGTGCCCGGCGCGCCCTCGCCCACAAtcgagcagcagcatcagcagcagcagcaacaacagcaacagcaacagcagcagcagcagcaggcacaggctcaacagcagcaggaacaccaggtgcaacagcagcaattggTTAACAGTGCGCTGCTGGCACAGCATAGTCTTGCAACAAACAGTGGCATACAGTTGGCCAACGCGGCTGGGCAACAGCTGctgagcaacagcagcggcagcagcagcagcttgcaacagttgcagcagcagcaacagcagcagcagcaacaacaattgcagccaACGCCGCGCAAATCTCGGCTGCGTAAACGCTCCAAATCGCCAGATTTACAACTGGGCGGTCAGCAACCACAGCCGGCACATCataatcaacagcagcagcagcaacagcaacagcaacaacaacagcatcaacatcatcatccgCAAACGATACTCATCCAGGGACAGAATCAAACATCTATCGTGAGTCTGCAGCAAACAGCTGACGGCAATTATATACCCGTTACGGCCGGCGACGACTCCGATAGCGATAACAAGCCACAAAAGATCTGCAAGACAGAGCAATCGGTGGCCAGCCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACATGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAGCATTTGGCGCATGTTCAggcgcagcaacagcagcagcagcagcagcaacaacagcagcagcaacagcagcagcagcagcaacatgcacatcatcatcagcatttgCACGCTCAGCAGCTGTTGCagagtcagcagcagcagcagcaacaacagcagcagcagcagcaacagcaacaacaccaacagcagcagcaacaggcagcGGTGCATGCACAGCATGCGCATGCCACACATGCGGAAATCAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGTCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAAAATGAGCCGCACTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACATTATGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGAACGAAATCATGGAACGAGGATGCATTACAGAATGCGTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCGAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATCTGGAGCGTGCATTGGAGGCGATACGTGCCGGTAATACGTCTGTGCAAAAAGCCAGTGCCGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTATCGCGTTCGAATCCAACACCTTGGTCTGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCCCTCTACGGGCGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACCAGTGGCGTTTCGCTGATCAATACCTCGGGGAACACGACTGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAACTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCACATGCACCGCCGACGCCGCAGCATCACAGCACACCGCAGCACCACAGTTCACAGCAGGGGCCACCGACGCCACAGCATATGCAGCAGCATGTGGTGCAcatgcagcagcagtcgccacACCAGGCGcaccatcagcaacagcagcagcagcagcagcacatgcaacagcagcaacaggatgTGGTTACATCCAGCAGCCAGGTGGTGcatagccagcagcagcagcagcagcttcagcaGATCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MRCPFANWAGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLVPGAPSPTIEQQHQQQQQQQQQQQQQQQQAQAQQQQEHQVQQQQLVNSALLAQHSLATNSGIQLANAAGQQLLSNSSGSSSSLQQLQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGQQPQPAHHNQQQQQQQQQQQQQHQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVTAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQHAHHHQHLHAQQLLQSQQQQQQQQQQQQQQQQHQQQQQQAAVHAQHAHATHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHAPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQHMQQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00482150; iTF_00522089; iTF_00575498; iTF_00570316; iTF_00805102; iTF_00528720; iTF_01570161; iTF_00805885; iTF_00485778; iTF_00585107; iTF_00576980; iTF_00525045; iTF_00542358; iTF_00557125; iTF_00498069; iTF_00518359; iTF_00496514; iTF_00609798; iTF_00576263; iTF_00619758; iTF_00573967; iTF_00499504; iTF_00560176; iTF_00558579; iTF_00495028; iTF_00548724; iTF_00566708; iTF_00593012; iTF_00616116; iTF_00497301; iTF_00521269; iTF_00501722; iTF_00516911; iTF_00564570; iTF_00527965; iTF_00597278; iTF_00582879; iTF_00513376; iTF_00595866; iTF_00589470; iTF_00595166; iTF_00520549; iTF_00562389; iTF_00614107; iTF_00509020;
- 80% Identity
- -