Doch008273.2
Basic Information
- Insect
- Drosophila ochracea
- Gene Symbol
- -
- Assembly
- GCA_035044125.1
- Location
- JAWNML010000050.1:5242076-5247714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.8e-08 33.9 0.0 1 40 600 640 600 643 0.90 2 4 6.4e-14 9.7e-11 41.1 0.1 2 39 655 692 654 695 0.94 3 4 1.5e-17 2.3e-14 52.7 0.0 1 45 709 754 709 754 0.98 4 4 1.5e-19 2.3e-16 59.1 0.0 1 43 761 804 761 805 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTTTGCTGATTTGCTTTGTTATCTATTCGATTGTTTTGCAGGGTCTGCTGCGCACCGCGgaacaattgaaaatcaagGGTCTCTGTGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCTTTGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGCATAGTGCCCGGAGCGCCCTCGCCCACgatcgagcagcagcagcagcatcatcaacagcagcagcagcaacagcaacaacagcagcaacatcagcaggaacatcagcagcaggtgcaacagcagcagcagcagctggtcaACAGTGCTTTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATACAGTTGGCCAACGCGGCTGGGCAACAGCTGCTGAGCAATACAagcggcagcagtagcagtctgcaacagttgcagcagcaacagcagcagcagcaacagttgcagccaACGCCGCGTAAATCGCGAGTGCGAAAACGCTCAAAAACGCCTGATTTGCAACTAGGTGGCAACGCCATCGTTCAACAACCACAGCCGGctcaccatcagcagcagcagcaacacaaccaacaacaacagcagcagcaacaacaacaacagcagcagcaacaacagcagcatcaacagcagcaacatcatcatccgcAAACGATACTCATCCAGGGACAGAATCAAACATCGATCGTGAGTCTACAGCAGACGGCAGACGGCAATTATATACCCGTTGGGTCAGCTGGCGACGATTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCAGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACTCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAGCATTTGGCCCATGTAcaagcgcaacagcagcagcagcaacagcagcagcagcaacaacaacagcagcaacaacaacagcagcagcagcaacaacaacaacagcagcagcagcaacaacatgcacatcatcatcatcagttgCACGCTCAGCAACTGTTGGCCcagagtcagcagcagcagcagcagcaacaacaacagcaacagcagcagcagcagcagcaccaacaacaacagcagcagcaggcggcggTGCATGCCGCACAACATGCAGCGCATGCCACGCATGCGGAAATCAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCGAACGGTTCGCCGCACGATCAAAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGAGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCCCTGCAAAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTATACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATCTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAACACCTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACGCCCTGGTCTGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGATGTGGTTGCCAATACCAGTGGCGTCTCGCTGAACAACACCTCGGGCAATACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGTCGCCACATCCGCCGACGCCACAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGCATATGCAACAGCATGTGGtgcacatgcaacagcagTCGCCACACCAGGCGcaccatcaacagcaacagcagcagcaacagcagcagcagcacatgcaacagcaacaggatgTGGTCACATCAAGCAGCCAAGTGGTGCatagccagcaacagcagcagcagcttcagcagATCTATCAGCATCACGGCACGCCCGAGCGCAGTTGA
- Protein Sequence
- MEILLICFVIYSIVLQGLLRTAEQLKIKGLCEPAENADDLNDAALATITVSENIQQAVVGNIVNASIVPGAPSPTIEQQQQHHQQQQQQQQQQQQHQQEHQQQVQQQQQQLVNSALLTQHTLATNSGIQLANAAGQQLLSNTSGSSSSLQQLQQQQQQQQQLQPTPRKSRVRKRSKTPDLQLGGNAIVQQPQPAHHQQQQQHNQQQQQQQQQQQQQQQQQHQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSSQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQQQQQQQHQQQQQQQAAVHAAQHAAHATHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQQQHMQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00803519;
- 80% Identity
- -