Dhaw006220.1
Basic Information
- Insect
- Drosophila hawaiiensis
- Gene Symbol
- -
- Assembly
- GCA_037043685.1
- Location
- JBAMBA010000122.1:2990682-2998675[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.9e-08 33.8 0.0 1 40 654 694 654 697 0.90 2 4 6.9e-14 1.1e-10 41.0 0.1 2 39 709 746 708 749 0.94 3 4 1.6e-17 2.5e-14 52.6 0.0 1 45 763 808 763 808 0.98 4 4 1.6e-19 2.5e-16 59.0 0.0 1 43 815 858 815 859 0.97
Sequence Information
- Coding Sequence
- AtgagccacagcagcagcagtggcagccacgACCGCAAaacccagcagcaacagcagcagcagcagcagctcttgttcttgctcctgctcctgcaaCCCTTCCAAGCAATCATGCATCCTTTACTCGTTGCCcgtgcccctgcccctgcccctgctcAGCACAACACACCGTCGCGCATTTCCATGCCCCGGTCGCTGCGCACCGCGgaacaattgaaaatcaagGGTCTCTGTGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCTTTGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGCATAGTGCCCGGTGCGCCCTCGCCCACgatcgagcagcagcagcagcatcatcaacagcagcagcagcagcagcaacagcaacaacagcagcaacatcagcaggaacatcagcagcaggtgcaacagcagcagcagcagcagcagctgatcaaCAGTGCTTTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATACAGTTGGCCAACGCGGCtgggcaacagctgctgagCAATACAagcggcagcagtagcagtctgcagcagttgcagcaacagcagcaacagcaacaattgcagccaaCGCCGCGTAAATCGCGAGTGCGAAAACGCTCGAAAACGCCTGATTTGCAACTGGGTGGCAACGCCGTCGTTCAACAACCACAGCCGGCtcaccatcagcagcaacagcaacacaaccaacagcaacaacagcagcagcagcaacaacaacaacagcagcaacaacaacagcaacatcaacaacaacaacaacatcatcatccgCAAACGATACTCATCCAGGGACAGAATCAAACATCGATCGTGAGTCTACAGCAGACGGCAGACGGCAATTATATACCCGTTGGGTCAGCTGGCGACGATTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgacTAGTTTAGGCATGGGCATGAACGGCGGTTTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAGCACTTGGCCCATGTAcaggcgcaacagcagcagcagcagcagcagcaacaacagcagcaacaacaacaacaacagcagcagcaacagcagcagcagcagcaacaacaacagcagcagcagcagcaacatgcacatcatcatcatcagttgcACGCTCAGCAACTGTTGGCCcagagtcagcagcagcagcagcagcaacaacaacagcaacagcagcagcaacaccaacaacagcagcagcagcaggcggcggTGCATGCCGCACAGCATGCAGCGCATGGCACGCATGCGGAAATCAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCGAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGAGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCCCTGCAAAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTATACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATCTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAACACATCTGTACAAAAAGCAAGCGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCGGTGCgCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGATGTGGTTGCCAATACCAGTGGCGTCTCGCTGAACAACACCTCGGGCAATACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGTCGCCACATCCGCCGACGCCACAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGCATATGCAACAGCATGTGGtgcacatgcaacagcagtcgCCACACCAGGCGcaccatcaacagcagcaacagcaacagcagcagcaacagcagcagcagcagcacatgcaacagcaacaagatgTGGTCACATCAAGCAGCCAAGTGGTGCatagccagcaacagcagcagcagcttcaacaGATCTATCAGCATCACGGCACGCCCGAGCGCAGTTGA
- Protein Sequence
- MSHSSSSGSHDRKTQQQQQQQQQLLFLLLLLQPFQAIMHPLLVARAPAPAPAQHNTPSRISMPRSLRTAEQLKIKGLCEPAENADDLNDAALATITVSENIQQAVVGNIVNASIVPGAPSPTIEQQQQHHQQQQQQQQQQQQQQHQQEHQQQVQQQQQQQQLINSALLTQHTLATNSGIQLANAAGQQLLSNTSGSSSSLQQLQQQQQQQQLQPTPRKSRVRKRSKTPDLQLGGNAVVQQPQPAHHQQQQQHNQQQQQQQQQQQQQQQQQQQHQQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQQQQQHQQQQQQQAAVHAAQHAAHGTHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQQQQQQQHMQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00803519;
- 80% Identity
- -