Dneo012876.1
Basic Information
- Insect
- Drosophila neoperkinsi
- Gene Symbol
- -
- Assembly
- GCA_037043555.1
- Location
- JBAMBG010008112.1:12107-18482[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.6e-12 1.9e-08 33.9 0.0 1 40 601 641 601 644 0.90 2 4 5.3e-14 1.1e-10 41.1 0.1 2 39 656 693 655 696 0.94 3 4 1.2e-17 2.5e-14 52.7 0.0 1 45 710 755 710 755 0.98 4 4 1.2e-19 2.5e-16 59.1 0.0 1 43 762 805 762 806 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTTTGCTGATTTGCTTTGTTATCTATTCGATTGTTTTGCAGGGTCTGCTGCGCACCGCGgaacaattgaaaatcaagGGCCTCTGTGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCTTTGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGCATAGTGCCCGGTGCGCCCTCGCCCACgatcgagcagcagcagcatcatcagcagcagcagcaacagcaacagcagcaacatcagcaggaACATCAGcaggtgcaacagcagcagcagcagctggtcaACAGTGCTTTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATTCAGTTGGCCAACGCGGCTGGGCAACAGCTGCTGAGCAATACAagcggcagcagtagcagtctgcaacagttgcagcagcagcaacagcagcagcagcagcaacagttgcagccaACGCCGCGTAAATCGCGAGTGCGAAAACGCTCGAAAACGCCTGATTTGCAACTGGGTGGCAACGCCGTCGTTCAACAACCACAGCCGGctcaccatcagcagcagcagcagcagcacaaccaacaacaacagcaacaacaacagcagcagcaacaacaacagcaacaccaacaacaccaacaacaacaacaacatcatcatccgCAAACGATACTCATCCAGGGACAGAATCAGACATCGATCGTGAGTCTACAGCAGACGGCAGACGGCAATTATATACCCGTTGGTTCCGCTGGCGACGATTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAACACTTGGCCCATGTAcaagcgcaacagcagcagcagcagcagcaacaacagcagcagcagcaacaacaacagcagcagcaacagcaacaacagcagcagcagcaacaacagcaacagcagcagcaacaacatgcacatcatcatcatcagttgCACGCTCAGCAGCTGTTGGCCCagagtcagcagcagcagcaacaacaacagcagcagcagcaacaccaacagcaacaacagcagcagcagcaggcggtgCATGCCGCACAGCATGCAGCGCATGCCACGCATGCGGAAATCAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCGAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGAGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCCCTGCAAAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTGTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATCTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACCTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACGCCCTGGTCTGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGACGTGGTTGCCAATACCAGTGGCGTCTCGCTGAACAACACCTCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGCCGCCACATCCGCCGACGCCACAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAACATATGCAACAGCATGTGGTGCacatgcaacagcagtcgCCACACCAGGCGcaccatcaacagcaacagcaacagcagcagcaacagcagcagcagcagcagcacatgcaacagcaacaggatgTGGTCACATCAAGCAGCCAAGTGGTGCAtggccagcaacagcaacagcagcttcaGCAGATCTATCAGCATCACGGCACGCCCGAGCGCAGTTGA
- Protein Sequence
- MEILLICFVIYSIVLQGLLRTAEQLKIKGLCEPAENADDLNDAALATITVSENIQQAVVGNIVNASIVPGAPSPTIEQQQHHQQQQQQQQQQHQQEHQQVQQQQQQLVNSALLTQHTLATNSGIQLANAAGQQLLSNTSGSSSSLQQLQQQQQQQQQQQLQPTPRKSRVRKRSKTPDLQLGGNAVVQQPQPAHHQQQQQQHNQQQQQQQQQQQQQQQHQQHQQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQQHQQQQQQQQQAVHAAQHAAHATHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPPPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQQQQQQQHMQQQQDVVTSSSQVVHGQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00803519;
- 80% Identity
- -