Dkok008737.2
Basic Information
- Insect
- Drosophila kokeensis
- Gene Symbol
- -
- Assembly
- GCA_035042145.1
- Location
- JAWNLT010000264.1:15458213-15463969[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1.8e-08 33.9 0.0 1 40 594 634 594 637 0.90 2 4 6.3e-14 1e-10 41.1 0.1 2 39 649 686 648 689 0.94 3 4 1.5e-17 2.4e-14 52.7 0.0 1 45 703 748 703 748 0.98 4 4 1.5e-19 2.4e-16 59.1 0.0 1 43 755 798 755 799 0.97
Sequence Information
- Coding Sequence
- atgtatgcTGAAAATCATCGACATTTACTGATTTGCATTGTTATCTATTCGATTGTTTTGCAGGGTCTGCTGCGCACCGCGgaacaattgaaaatcaaaggTCTTTGTGAGCCGGCTGAGAATGCGGATGACTTAAATGAAGCGGCTTTGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAACGCGAGCATAGTGCCCGGAGCGCCCTCGCCCACGatcgaacagcagcagcagcagcaacagcagcagcatcatcaacagcaacagcagcaacatcagcaggagcatcagcagcagcaacagcagcagcagctgatcaACAGTGCTTTGCTGACACAGCATACGCTTGCAACAAACAGTGGCATACAATTGGCCAACGCGGCTGGGCAACAGCTGCTGAGCAATACAagcggcagcagtagcagcctgcaacagttgcagcagcagcagcagcagcaacagttgcagccagCGACGCGCAAATCGCGAGTGCGTAAACGTTCGAAAACGCCAGATTTGCAACTGGGTGGCAACAACGCCATCGTTCAACAACCACAGCCGGCTcaccatcagcaacagcagcagcaacacaaccaacaacaacagcaacaacagcagcaacagcaacaacaacaacatcatcatccgCAAACGATACTCATCCAGGGACAGAATCAAACATCGATTGTGAGTCTACAGCAGACGGCAGACGGCAATTATATACCCGTTGGCTCCGCTGGCGACGACTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCAGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGTGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGACTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAACACTTGGCCCATGTgcaagcgcagcagcagcaacagcaacaacaacaacaacaacaacagcagcagcagcagcagcagcagcaacaacaacagcagcagcaacaacaacagcagcaacaacatgcacatcatcatcatcatttgcaCGCTCAGCAACTGTTGGCCCagagtcagcagcagcagcagcagcaacaacagcaacagcagcagcaacaccaacaacaacagcagcagcagcaggcggcggTGCATGCTGCACAGCATGCAGCGCATGCCACGCATGCGGAAATTAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGGCCACCGGGCATATGGacATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTACACGAATTTGGATCAGCAGCACGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCCCTGCAAAATGCATTGGAGGCATTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACCTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTATATGGACGCTGCAAGCGTGAGGGCATCGAACTATCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGATGTGGTGGCAAATACCAGTGGCGTCTCGCTGAACAACACCTCGGGCAATACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttccCGTACAGTCCGTCGCCACATCCGCCGACGCCACAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGCATATGCAACAGCATGTAGtgcacatgcaacagcagtcgCCACATCAGGcacaccatcaacaacaacagcagcagcagcagcagcacatgcaacaacaacaagacgtGGTCACATCAAGCAGTCAAGTGGTGCatagccagcagcagcaacagcagcttcagcAGATCTATCAGCATCACGGCACGCCCGAGCGCAGTTGA
- Protein Sequence
- MYAENHRHLLICIVIYSIVLQGLLRTAEQLKIKGLCEPAENADDLNEAALATITVSENIQQAVVGNIVNASIVPGAPSPTIEQQQQQQQQQHHQQQQQQHQQEHQQQQQQQQLINSALLTQHTLATNSGIQLANAAGQQLLSNTSGSSSSLQQLQQQQQQQQLQPATRKSRVRKRSKTPDLQLGGNNAIVQQPQPAHHQQQQQQHNQQQQQQQQQQQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSSQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLTQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHHLHAQQLLAQSQQQQQQQQQQQQQQHQQQQQQQQAAVHAAQHAAHATHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMATGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQHMQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00803519;
- 80% Identity
- -