Dfor014135.2
Basic Information
- Insect
- Drosophila formosana
- Gene Symbol
- -
- Assembly
- GCA_035045625.1
- Location
- JAWNOW010000763.1:634338-640381[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-11 4.6e-08 32.6 0.0 1 40 570 610 570 613 0.90 2 4 6.8e-14 9.8e-11 41.1 0.1 2 39 625 662 624 665 0.94 3 4 1.6e-17 2.3e-14 52.8 0.0 1 45 679 724 679 724 0.98 4 4 1.4e-19 2.1e-16 59.3 0.0 1 43 731 774 731 775 0.96
Sequence Information
- Coding Sequence
- ATGGGTCTGCTGCGCACCGCGGAACAGTTGAAAATCAAAGGACTCTGCGAGCCGGCTGAGAATGCGGATGATCTGAATGACGCTGCATCGGCGACGATAACCGTGTCGGAGAACATACAGCAGACGGTCGCTGGGAACATTGTGAACGCGAGCCTTGTGCCCGGCGCTCCCTCGCCCAccctcgagcagcagcaacagcatcaccagcagcaacaggcacagcagcaacagcaacagcagcagcagcaacaacagcaacagcagcaggagcatcaacagcaggtgcaacagcagcagctggtgaACAGTGCGTTGCTGGCACAGCACAGTCTTGCAACAAACAGTGGCATACAGTTGGCCAGTGGGGCCGGGCAACAGCTGTTGAGCAACTCGAGtggcaccagcagcagcctgcaacagttgcagcagcagcaacagcagcagcagcagcaacaacagttgcagccaACGCCGCGTAAGTCGCGACTGCGTAAACGTTCCAAGTCGCCAGATTTGCAACTGGGTGGCAACGTCGCAgggcaacaaccacaaccggcgcaccatcaacaacaacagcagcaacagcagcagcagcaacagcaacaacatcatcaacaacatcatccGCAAACGATACTCATCCACGGCCAGAATCAAACATCGATCGTGAGTCTGCAGCAAACAGCCGACGGCAATTATATACCAGTTACGGCTGGCGACGATTCCGATAGCGACAATAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCCGCATCTGGCGTGAGCGGCCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAATAAAATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTAAGCGTGCCCATGGGATTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCACCATCATACGACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAAGTGATTGAGGCCAAGCACCTGGCGCATGTGCaagcccagcagcaacagcagcaacagcaacaacagcaacagcagcagcaacaacagcagcaacatcagcaacatgcacatcatcatcagcatttgCACGCTCAGCAATTGTTGGCGCAaagtcagcaacagcaacagcagcagcagcagcaacaacagcagcagcagcagcaacagcaacatcagcagcaacagcagcaggcagcggtGCATGCACAGCATGCCACGCACGCTGCACATGCGGAAATTAGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGacATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCAAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTGCGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGCTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCACTGCAGAACGCTCTGGAGGCGCTGCGTTCGGGACAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACTCCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCGGTGCAAAAAGCCAGCGCCGAATTCGGCATACCCACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACATTATAACCTGCCCTACAGCTCGCTCTATGGGCGCTTCAAGCGCGGCAAATACGACGTTACGGCCAACACCAGCGGCGTCTCACTGATGAACACTTCGGGCAACACAACAGGCAGCATTGAGATTATTGAACACAGTCAGGAGAACTCGttGCATatgttgcagcaacagttcCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCATCATAGCACACCGCAACATCATAGCACACCGCAGCACCACAGTTCGCAGCAGGGGCCGCCGACGCCACAGCACATGCAACAGCACGTGGTGCAcatgcagcagcagtcgccgcATCAGGCGcaccatcaacaacagcagcagcagcagcaacaacagcagcagcagcacatgcaacagcagcaacaggatgTGGTAACATCGAGCAGCCAAGTGGTGCAcagtcagcaacaacaacagcagcttcaGCAGATCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQTVAGNIVNASLVPGAPSPTLEQQQQHHQQQQAQQQQQQQQQQQQQQQQEHQQQVQQQQLVNSALLAQHSLATNSGIQLASGAGQQLLSNSSGTSSSLQQLQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGNVAGQQPQPAHHQQQQQQQQQQQQQQHHQQHHPQTILIHGQNQTSIVSLQQTADGNYIPVTAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAASGVSGQAIVTQIVVARDGKDNKMTSLGMGMNGGLLSVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQHQQHAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQQQQHQQQQQQAAVHAQHATHAAHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNCALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQQQQQQQQQQQHMQQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00803519;
- 80% Identity
- -