Cced012025.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
-
Assembly
GCA_902439185.1
Location
CABPRJ010001016.1:16157-26488[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.001 0.078 13.6 0.4 2 23 205 227 204 227 0.93
2 19 0.0011 0.088 13.4 0.2 1 23 258 281 258 281 0.95
3 19 0.088 6.9 7.5 0.5 2 23 288 310 287 310 0.95
4 19 5.1e-05 0.004 17.6 0.6 2 23 382 404 381 404 0.95
5 19 0.22 17 6.2 0.6 3 23 459 481 457 481 0.93
6 19 0.97 76 4.2 0.1 2 23 490 512 490 512 0.93
7 19 3.9e-05 0.003 18.0 0.6 2 23 552 573 551 573 0.96
8 19 0.016 1.3 9.8 3.2 1 23 619 642 619 642 0.95
9 19 0.0013 0.1 13.3 1.9 2 23 649 671 648 671 0.96
10 19 0.00018 0.014 16.0 2.1 1 21 694 714 694 715 0.95
11 19 9.8e-06 0.00077 19.9 3.0 1 23 733 756 733 756 0.97
12 19 1.2 91 4.0 0.4 3 23 761 787 760 787 0.81
13 19 7.5 5.9e+02 1.4 3.7 1 23 824 847 824 847 0.89
14 19 0.095 7.5 7.4 0.1 2 23 885 907 885 907 0.87
15 19 0.00014 0.011 16.3 0.2 2 23 913 934 912 934 0.96
16 19 0.0067 0.53 11.0 3.1 1 23 1000 1023 1000 1023 0.95
17 19 1.3 99 3.8 0.4 2 23 1042 1064 1041 1064 0.94
18 19 0.44 35 5.3 1.1 1 23 1102 1124 1102 1124 0.95
19 19 0.032 2.5 8.8 0.8 1 23 1134 1156 1134 1156 0.97

Sequence Information

Coding Sequence
ATGGAATCTAATCATTCTACACAAAATAATAAAATGTCACGATTACATCATATTCAACCAGAAGTATCAATTTTTGCCGTTTCGCCAAATCCTCCACCTAAACCTAGAAAAATCAAAAGTGAACCTCCACCTTTAAAACCTGCAATATGGCCTGTGAAGCAACCTGTGGCATCTATGCAATTGCAACAGTTCTTAAAAGCTCAGCGCCTGAGTCAAAAGCAACCAGTACAAAGAGGGCCCCCGGCACTAAACAAAATGCAATACTTTGCCAATGATAGCCGTACTGAATATCAAAAACAGCAACAGCAAATGCATCAAAAACTTATGCAACAACGAATGGCTAACAATAATAGTATCCGGGAAGATTCTCCAAATCCCATGGATTTTCTTGAAATTGGTGTCCATCCCGGTAACACTATTATCAATAATATTTCTAAAAATGCAAAACCAAAATCTAATTTTAGAATAGGAGGAACTCTTGGGTCATCAGACTCCGGTAGTCGCCGAAAGAATGCCAATCCTAGAAAAGTAGCTCGAGAAAATGAAATTGAAATACCAATACCAAATGATCATTTTCTATTATCTCAGATTAAACAAGAAAATCTTCGACAATCTTGTTTATTGTGTGAACGAAATTTTAGCAATAAATATGATCTTAGTCAACATATATCAGAAGTTCATGGTATCGAACAATCAGATTTACATCAATCAAATGGACATTTAGGCGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCAGAAACTGTATTCTTTTGTGAAGTATGTACTAGAGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTTAGAGGGCACAAACAAGAAGCTGCAGTAACATGTGGAGTATGTATGAAAATCTGTAGTGATAGTAAATCACTTATGGAACATGTGAATGTCCAACACCCCAAAAGTAGTGATACGGCTGATTCTATACAGCGTAGGTATAGATGTCAAGTTTGTGCTCGACAACATGATACTAAAAAAAAAATGATGAGGCATGTAGTTATTCACACAGTTTACGATAATGATGGTCAGATTATAGACCCTGATAAATTAATTATTATCAACAATAATTTTCATCCAACCAAGGCTTCAAACAATGAGCATTATACAATTAGTTGTCAAGTTTGTCATAAAGTGTTTCCAAGTGAAGAAAAACTTTTACGGCACATGTCATCTGTTCATTTGATGACTGGTTGTGATGATATGATCACAACAACACTATTGATAGGTAATTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGGGACTCATGTGGTTCTCGTACTGAAAAATGGTGGCATGTACTTAAAGAACATGGCACTAATGAAACACTTATATGTCCAAAACCAGATTGTAGAAAATTATTTGTGTCACAATCTTTACAAATTGAACATCAATCTCATCATGAACTCCAAGGTGATCTTCCTAACACATGTGAAGTATGTGGACGGTTGTGGCCCAATAGAAATGATTTTTATAAACACATTATGGCAGTACATGCCGAATGTATGCCTTTGTTGTGTGGTATATGCCTAAAAGTTCATTTAGATGTACCTAAACTTAGAGAACACATAAAAGAAAAACATGAGCCTTTAGTATCAAAAGAGAATGCTATATACTGTGACATATGTGGCCGAACTTATACTAAATGGTCAAAAATGATGAGACATAGATCAATACACAATGTTGAAGACCAAGTTTCTCATTTTGTAACAGATCAACTAACAGAAGTGAACCTTAAATGTACATTATGTCCAAATACAGAATTTAAGACTGTTGAAGAGATATCTGAACACCGTAAAAATGACCATCAACTACATGTGTGTGATCTTTGTTCTAAATATTACAGTGGTAACAATCATCTATGGAAACATGTAAGTAGGCAACACAAAGGTCACCCAGATGTCACATGTAGTTTATGTGCTCGCACATCTGCTTCCAAAGTTCACCTTAAACGACATATGATGAAATATCATTCTGATCCTGTAGACCAACTTATAGACAAGTCAAATAATAGTAGTTGTGCAGAAATAAATGCTACACATCAATGTATGAAATGTGATAAAGTGTTCAGGATAAGAAGTTTGTTGAAGAAACATTTAAAATATTGCAAAGGTAAAAGAGACTCGATGCCACCAATACCCAAAGAAAAGGGTCATTATCCTTGTACAAAATGTGGTAAAATATTTGAATATCAAACTTACTTAAATAGGCACTTGAGGCATAGTCATCTAGTTCAGTATTGTGAAATATGTTCAGAAGATAAAACCGGTGAACATTTTGATAATAAAATGTTATTGATGGATCATATCAGGGAAAAACACGTAAATAATCCAGAGTTATGTTGTGATTTTGAAGGTTGTGACAAAGTTATGAGAACAAAAGCTGATTGCCAAAAACATAAACGTGATCATGTTCGTAAAGTGTTTTCATATGTATGTGAATTTTGTGGAGATTTACATTCAAATAAAAAAACTTATAGAAAACACTTACGACAACGACACAAAGGCAACACTCAATATTTATGTGGAATGTGTATGGAACTTTGTGTTGACAGTGATGGTTTATCAAAACATTTACATGAAGCACACCCTCAAATTTTTAACAAACCAAATACTTGCCAACTTTGTGGAAAAATGTTCACTGTTGGAAGTAAAGTAGGTGAGCACATTGATAAAATTCATGGAAAAAATTTAAAACCTTGCAAAATCTGTTGGAAAGTATTCAGTGATATGGAAAAACTTAAAGATCATATTGAAAATCATCCAGCAAAAGAAGATTTTCCTAAAGTAGTTACACCTATTAAAAAATTAATTGACCCTAAACCAAAAACTCCAAAATTATACGGTCTTCCTAAAGAACTAGCAGAACTTGGTTTTAGTGAAGAACAACAACAGAGTTTGAAACGAGATATAGATGATGCTTCATCAGATATAAATACAAAGAGACTGAGAAAATTACATTCTTGTACAGTTTGCTACAAAAGCTTCAGATTTGAAACAGATCTGTATGATCACAAAAGAGAAGAACATTCTATTATAGAAGATGGTTATAATATGGAAGAAGACAATAATTGTGGAAAAACTGTATGTGGAATATGCAGAAAAGAATGGATAAGTTTGAAACATTTCTGGCAACATCTAATAAGGGCTCACCGTGCAGAAGCTGCTTTTGTTTGTGGGCTTTGCTGTCACATAAGTACAAGTTATAATAATTTATCATTACACCTGGATAATCATCATCCAAATGCTACCGTGTCATCATTATTTGCATGTGATGTTTGTGGTCGTAATCACAATGCATTTTCAAAACTTCAGAAACACCGTATTATTCATTCAAATGCACCAACTGCATCTCCAAAATTTCATTGTGATGAGTGTGAACTTGTGTTTAATACAGAGTCTTTTGGGGAAAAACATATCTTGACCCATGGTCCTGGTGGCAAATTGTGCAAAGGTAAAGATTTGTGTCAAGAAATGGATGATGACATGTTGGAGGAACAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATTGAGCAAAATGATGAAGTAGAAGATGAAGAAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTAA
Protein Sequence
MESNHSTQNNKMSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPVKQPVASMQLQQFLKAQRLSQKQPVQRGPPALNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNSIREDSPNPMDFLEIGVHPGNTIINNISKNAKPKSNFRIGGTLGSSDSGSRRKNANPRKVARENEIEIPIPNDHFLLSQIKQENLRQSCLLCERNFSNKYDLSQHISEVHGIEQSDLHQSNGHLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNVQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTLLIGNSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNETLICPKPDCRKLFVSQSLQIEHQSHHELQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHLDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPNTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMMKYHSDPVDQLIDKSNNSSCAEINATHQCMKCDKVFRIRSLLKKHLKYCKGKRDSMPPIPKEKGHYPCTKCGKIFEYQTYLNRHLRHSHLVQYCEICSEDKTGEHFDNKMLLMDHIREKHVNNPELCCDFEGCDKVMRTKADCQKHKRDHVRKVFSYVCEFCGDLHSNKKTYRKHLRQRHKGNTQYLCGMCMELCVDSDGLSKHLHEAHPQIFNKPNTCQLCGKMFTVGSKVGEHIDKIHGKNLKPCKICWKVFSDMEKLKDHIENHPAKEDFPKVVTPIKKLIDPKPKTPKLYGLPKELAELGFSEEQQQSLKRDIDDASSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDGYNMEEDNNCGKTVCGICRKEWISLKHFWQHLIRAHRAEAAFVCGLCCHISTSYNNLSLHLDNHHPNATVSSLFACDVCGRNHNAFSKLQKHRIIHSNAPTASPKFHCDECELVFNTESFGEKHILTHGPGGKLCKGKDLCQEMDDDMLEEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEQNDEVEDEEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV