Pace015388.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- -
- Assembly
- GCA_949715065.1
- Location
- OX454268.1:17255456-17260170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00076 0.11 13.6 0.4 2 23 195 217 194 217 0.93 2 24 0.00085 0.12 13.4 0.2 1 23 248 271 248 271 0.95 3 24 0.077 11 7.3 0.8 2 23 278 300 277 300 0.96 4 24 7.6 1.1e+03 1.0 1.8 1 23 314 336 314 336 0.93 5 24 3.9e-05 0.0055 17.6 0.6 2 23 372 394 371 394 0.95 6 24 9.4 1.3e+03 0.7 0.7 2 23 421 443 421 443 0.92 7 24 0.54 77 4.6 0.3 3 23 451 473 449 473 0.93 8 24 0.73 1e+02 4.2 0.1 2 23 482 504 482 504 0.93 9 24 3.2e-05 0.0046 17.9 0.3 2 23 544 565 543 565 0.96 10 24 0.012 1.7 9.8 3.2 1 23 611 634 611 634 0.95 11 24 0.0015 0.21 12.6 1.6 2 23 641 663 640 663 0.96 12 24 0.0059 0.84 10.8 1.6 1 21 686 706 686 707 0.91 13 24 8.6e-06 0.0012 19.7 4.7 1 23 724 747 724 747 0.97 14 24 3.1 4.3e+02 2.2 1.0 7 23 761 778 751 778 0.84 15 24 3.9 5.6e+02 1.9 2.9 3 23 786 808 784 808 0.91 16 24 1.5 2.2e+02 3.2 4.0 1 23 815 838 815 838 0.95 17 24 0.62 88 4.4 0.4 1 23 844 867 844 867 0.91 18 24 0.21 30 5.9 0.1 3 23 877 898 876 898 0.87 19 24 6.5e-05 0.0093 16.9 0.2 2 23 904 925 903 925 0.96 20 24 0.0051 0.72 11.0 3.1 1 23 991 1014 991 1014 0.95 21 24 1.1 1.5e+02 3.7 0.5 2 23 1042 1064 1041 1064 0.94 22 24 1.3 1.8e+02 3.4 1.1 1 23 1070 1092 1070 1093 0.94 23 24 0.18 25 6.1 2.3 1 23 1102 1124 1102 1124 0.97 24 24 0.69 97 4.3 0.2 1 13 1134 1146 1134 1154 0.87
Sequence Information
- Coding Sequence
- atgtcacgATTACATCACATCCAACCAGaagtatCAATTTTTGCAGTTTCTCCAAACCCACCACCAAAGCCAAGAAAAATAAAGAGTGAACCTCCACCTCTAAAACCAGCAATATGGCCTATGAAACAACCTGTGGAATCTATGCAATTACAGCAGTTCTTAAAAGCTCATCGCCTAAGTCAAAAGCAATCAGTACAAAGGGGGCCTCCGCCTCTAAATAAAATGCAGTATTTTGCTAATGATAGTCGTACAGAGTATCAAAAACAACAGCAGCAAATGCATCAAAAACTCATGCAACAACGTATGGCTAACAATAATAGTATCCGGGATGATTCACCAAACCCATTGGATTTTCTTGAAatTGGTGTTCATGCTGGGAATAGTATCATCAATAATATTCCTAGAGATATAAAAcagaaaactaattttaaatctggaGGAAGTTTAATGTCTCAATCAGATTCTGGTAGTCGTCGCAAGAATGCTAATCCAAGAAAAGTTGCTCGGGAAAATGATATTGAACCACCAGGACCAAGTGATCATTTCTTGTTATCTCAAATTAAACAAGAAAACCTTCGTCAATCTTGTTTACTCTGTGAACGTAATTTTAGCAACAAATATGATTTAAGTCAACATATATCTGAAATTCACGGTATTGAACCAGCTGATTTACATAAACTAAATGGAAATTTAGGAGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACTGTATTCTTTTGTGAAGTATGTACTAGGGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTCCGAGGTCATAAACAAGAAGCGGCTGTGACATGTGGTGTATGCATGAAAATCTGCAATGATAGTAAATCTCTAATGGAACATGTTAATACTCAACATCCTAAAAGTAGTGACACTGCTGATTCCATACAGCGTCGATATAGGTGTCAGGTGTGTGCTCGGCAACATGATACCAAGAAAAAAATGATGAGGCATGTTGTTATTCATACTGTTTATGATAACGATGGTCAAATTATAGAtcctgataaattaattataattaataataattttcatccaACCAAAGCTTCAAACAATGATCATTACACAATCAGTTGTCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAATTACTACGGCATATGTCATCAGTTCATTTGATGACTGGTTGTGACGATATGATAACTACAACTGTGACGACCACTGGTAACTCTTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGCGATTCTTGTGGTTCTCGTACTGAAAAATGGTGGCATGTGCTTAAAGAACATGGCACAAATGAAGCTCTTATTTGCCCAAAACCAGATTGTAGAAAACTATTTGTATCACAAGCTTTACAAATTGAACATCAATCTCATCATGAAGCTCAAGGTGATCTTCCTAATACTTGTGAAGTGTGTGGTCGGTTATGGCCTAATCGAAATGACTTCTATAAACACATAATGGCTGTACATGCTGAATGTATGCCTTTATTATGTGGTATATGTTTAAAAGTTCATGTTGATGTACCAAAACTCAGAGAACATATTAAAGAGAAACATGAGCCTTTAGTATCAAAAGAGAATGCTATTTATTGCGATATATGTGGTCGCACTTATACAAAATGGTCAAAAATGATGAGACATAGAGCAATACACAATGTTGAAGATCAAGTATCTCATTTTGTAACAGATCAGTTAACAGAAGTGAACCTTAAGTGTACACTGTGTCCGAATACTGAATTCAAAACCGTTGAAGAGATATCTGAACATCGAAAAAATGACCATCAATTGCATGTGTGTGACCTTTGTTCAAAATACTATAGTGGGAACAATCATTTATGGAAACATGTTAGTAGGCAACACAAAGGTCATCCGGATGTGACATGCAGTTTATGTGCTCGTACATCAGCTTCAAAAGTTCACCTCAAAAGacatatgataaaatatcattCTGATCCTGTAGATCAGCTTATTGACAAATCTAATAATAGTAGTTGTGCTGAAATGAATTCCATTCACCAATGTATTAGGTGTGACAAAGTGTTTAGGATTaggagtttattaaaaaaacatcttaAATACTGCAAGGGTAAAAGAGATGTAATGGCAGTACCTAAAGAAAAAGGTCATTATCCTTGTCCAAAATGTggtaaaacatttgaatatcatACTTATCTAAATAGACATTTAAGGCATAGTCATTTAGTTCAACATTGTGAGTTATGTTCTGAGGAAAAAACAGGTGAACACTTTGATAGTAAAATGCTATTGATGGACCATATCAGAGAGAAACATGGAAAAGATCCAGAGTTATGTTGTGACGTTGAAGGCTGTGACAAAGTTATGAGAACAAAAGCTGATTGTCAAAAGCACAAACGTGATCATATTCGGAAAGTGTTTTCATATATATGTGAATTTTGTGGGGATAtgcattcaaataaaaaaacctatagAAAACATTTGCGGCAGCGACACAAAGGCAATACTCAATATTTATGTGGTGTTTGTATGGAAGTATGTGTTGATAATGATGGTTTATCAAAGCATTTGCATGAAGCACACCCTCAAACATTTACCAAATCTAATATTTGCCAGCTCTGTGGGAAAATTTTTACTGTTGGTAGTAAAGTTGGGGAACACATAGATAAAATCcatggaaaaaatttaaagcCTTGCAAAATATGTTGGAAAGTATTTAGCGATATGGATAAACTTAAAGATCATATTGAAAACCATCCAGCAAAAGAAGACTCCCCTAAAGCATCTACACCTgtcaaaaaactaattgaacCCAAACCAAAAACTCCTAAGCTGTATGGTCTTCCAAAAGAATTAGCTGAACTTGGTTTCAATGAAGAACAACAGGAAAATTTAAAACGAGATATAGATGATGTAACATCAGATATAAATACAAAGAGACTGAGAAAATTACATTCTTGTACAGTTTGTTACAAAAGTTTTAGATTTGAAACCGATCTATATGATCATAAAAGGGAAGAGCATTCTATTATTGAAGATGGTTATATGGAAGAAGAAACTGAGCGCAAGGAGGTACAACCATCTCTACTCAGAAATAAAAGAACCGTCTGTGGTTTATGTAAGAAAGAATGGGTTagtttgaaacatttttggCAACATCTTATTCGAGCTCATCGTCCTCAAGCTGCTTTTGTTTGTGGTATTTGCTGTCAAATAACTTCCAGCTATGATGACTTGGCATTACATTTGGATAATCACCATCCAAACGCCacagttttatcattattttcttgtgaTGTTTGTGGTCGTAACCATAATGCGTTTTCAAAACTTCAGAAACATCGTAATATTCATTCTAATGCACCACCTTCATTTCCTAAGTATCATTGTGATGAGTGTGAACTTGTATTCAATACAAAGTTATTTGGCGAGAAACATATTTTATGCCATGGTCCTGGGAGTAAATTATGCAAGGGAAAAGATTTATGTCAAGAAATGGACGATGATATGTTGGAAGACCAAATAGAAGAGGAAGAGgaagatgaagaagaagaagttgAAAATGGTGGAGGCGCCGAAACTGAAAATAAAGgggatgatgatgatgatgaagatgatgatgatgatgatgatgatgaagaagAGGAAGAGATTGAACAAATTGATGATGGGGATGAAGATGATAATGAACAAAATGATGAAGTAGAAGATGAAGAGGAAACCGAACAGAATAAtgaagatgatgatgacgatCAAAATGAAGATATCGATGCTGAAGAAGATAAAGACCAGGTTGAAgccgatgatgatgatgatgacgacgatgatgatgtaGAAGAAAACGgtgttgatgatgatgatgatgaggaCGAAGAACAAGAGGACGATGATGACGATGAAGATGAAGAAGTCTAG
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPMKQPVESMQLQQFLKAHRLSQKQSVQRGPPPLNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNSIRDDSPNPLDFLEIGVHAGNSIINNIPRDIKQKTNFKSGGSLMSQSDSGSRRKNANPRKVARENDIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKYDLSQHISEIHGIEPADLHKLNGNLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICNDSKSLMEHVNTQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNDHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTVTTTGNSSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNEALICPKPDCRKLFVSQALQIEHQSHHEAQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHVDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRAIHNVEDQVSHFVTDQLTEVNLKCTLCPNTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSSCAEMNSIHQCIRCDKVFRIRSLLKKHLKYCKGKRDVMAVPKEKGHYPCPKCGKTFEYHTYLNRHLRHSHLVQHCELCSEEKTGEHFDSKMLLMDHIREKHGKDPELCCDVEGCDKVMRTKADCQKHKRDHIRKVFSYICEFCGDMHSNKKTYRKHLRQRHKGNTQYLCGVCMEVCVDNDGLSKHLHEAHPQTFTKSNICQLCGKIFTVGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEDSPKASTPVKKLIEPKPKTPKLYGLPKELAELGFNEEQQENLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDGYMEEETERKEVQPSLLRNKRTVCGLCKKEWVSLKHFWQHLIRAHRPQAAFVCGICCQITSSYDDLALHLDNHHPNATVLSLFSCDVCGRNHNAFSKLQKHRNIHSNAPPSFPKYHCDECELVFNTKLFGEKHILCHGPGSKLCKGKDLCQEMDDDMLEDQIEEEEEDEEEEVENGGGAETENKGDDDDDEDDDDDDDDEEEEEIEQIDDGDEDDNEQNDEVEDEEETEQNNEDDDDDQNEDIDAEEDKDQVEADDDDDDDDDDVEENGVDDDDDEDEEQEDDDDDEDEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_01346661; iTF_01347498;
- 80% Identity
- -