Sflv004438.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- -
- Assembly
- GCA_003268045.1
- Location
- NW:265950-281531[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00059 0.051 13.6 0.4 2 23 206 228 205 228 0.93 2 25 0.00065 0.057 13.4 0.2 1 23 259 282 259 282 0.95 3 25 0.06 5.2 7.2 0.8 2 23 289 311 288 311 0.96 4 25 5.9 5.1e+02 1.0 1.8 1 23 325 347 325 347 0.93 5 25 3e-05 0.0026 17.6 0.6 2 23 383 405 382 405 0.95 6 25 7.2 6.3e+02 0.7 0.7 2 23 432 454 432 454 0.92 7 25 0.19 16 5.7 0.4 3 23 462 484 460 484 0.93 8 25 0.57 49 4.2 0.1 2 23 493 515 493 515 0.93 9 25 2.5e-05 0.0022 17.9 0.3 2 23 555 576 554 576 0.96 10 25 8.7 7.6e+02 0.4 0.3 2 23 596 619 595 619 0.88 11 25 0.0093 0.82 9.8 3.2 1 23 622 645 622 645 0.95 12 25 0.0012 0.1 12.6 1.6 2 23 652 674 651 674 0.96 13 25 0.0046 0.4 10.8 1.6 1 21 697 717 697 718 0.91 14 25 6.6e-06 0.00058 19.7 4.7 1 23 735 758 735 758 0.97 15 25 2.4 2.1e+02 2.2 1.0 7 23 772 789 762 789 0.84 16 25 1.3 1.1e+02 3.0 2.7 3 23 797 819 795 819 0.92 17 25 1.2 1e+02 3.2 4.0 1 23 826 849 826 849 0.95 18 25 0.22 19 5.5 0.7 1 23 855 878 855 878 0.91 19 25 0.16 14 5.9 0.1 3 23 888 909 887 909 0.87 20 25 5.1e-05 0.0044 16.9 0.2 2 23 915 936 914 936 0.96 21 25 0.0039 0.34 11.0 3.1 1 23 1002 1025 1002 1025 0.95 22 25 0.82 71 3.7 0.5 2 23 1053 1075 1052 1075 0.94 23 25 0.99 86 3.4 1.1 1 23 1081 1103 1081 1104 0.94 24 25 0.14 12 6.1 2.3 1 23 1113 1135 1113 1135 0.97 25 25 0.67 59 3.9 0.2 1 13 1145 1157 1145 1165 0.86
Sequence Information
- Coding Sequence
- AtggAAGCTAATCAGtctacacaaaataataaaatgtcacgATTACATCACATTCAACCAGAAGTATCGATTTTTGCTGTTTCTCCAAATCCACCCCCTAAACCAAGGAAAATAAAGAGTGAACCTCCACCACTGAAACCAGCAATATGGCCTATGAAACAACCTGTAGCATCTATGCAATTGCAGCAGTTCTTAAAAGCTCATCGTCTAAGTCAAAAGCAATCTGTACAAAGGGGGCCTCCACCACTAAATAAAATGCAGTATTTTGCAAATGATAGTCGTACAGAGTATCAAAAACAACAGCAGCAAATGCATCAAAAACTTATGCAACAACGTATGGCTAACAATAATAGTATCCGGGATGATTCACCAAACCCAATGGATTTTCTTGaaaTTGGTGTTCATGCTGGAAAtagtatcattaataatatttctagagATATAAAAccgaaaactaattttaaatctggaGGAAGTTTATTGTCACAATCAGATTCTGGTAGTCGTCGCAAAAATGCTAATCCAAGAAAAGTCGCTCGAGAAAATGACATTGAATCACCAGGACCAAGTGATCATTTCTTGTTATCccaaataaaacaagaaaaccTTCGTCAATCTTGTTTACTCTGTGAAcgtaattttagtaataaatatgatttaagtcAACATATATCTGAAATACACGGTATTGAACCTGctgatttacataaattaaatggaAACTTAGGAGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACTGTATTCTTTTGTGAAGTATGTACTAGAGAATTTCAAGATAAAGCTAGTCTTTGGTTACATATGGTCCGAGGTCATAAACAAGAAGCTGCAGTAACATGCGGTGTATGCATGAAAATCTGCAATGATAGTAAATCTCTAATGGAACATGTTAATACTCAACATCCTAAAAGTAGTGACACTGCTGATTCCATTCAGCGTCGATATAGGTGTCAGGTGTGTGCTCGGCAACATGATACCAAGAAAAAGATGATGAGACATGTTGTTATTCATACAGTTTATGATAATGATGGTCAAATTATAGAtcctgataaattaattataattaataataattttcatcctACCAAATCTTCAAATAATGATCATTACACAATAAGTTGCCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAACTTTTACGGCACATGTCATCAGTTCATTTGATGACTGGTTGTGATGATATGATAACTACTACTTTGACAACAACTAGTAACTCTTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGCGATTCTTGTGGTTCACGTACTGAAAAATGGTGGCATGTGCTTAAAGAACATGGCACAAATGAAGCTCTTATTTGCCCAAAACCggattgtaaaaaattatttgtatcacAAGCTTTACAAATTGAACATCAATCTCATCATGAAGCTCAAGGTGATCTTCCTAATACTTGTGAAGTATGTGGTCGGTTATGGCCTAATCGAAATGACTTCTATAAACACATAATGGCTGTGCATGCTGAATGTATGCCTTTATTATGTGGTATATGTTTAAAAGTTCATATTGATGTACCAAAACTCAGAGAACATATTAAAGAGAAACATGAGCCTTTAGTATCAAAAGAAAATGCTATTTATTGTGATATATGCGGTCGTACATATACAAAATGGTCCAAAATGATGAGGCATAGAGCAATACACAACGTTGAAGACCAAGTATCTCATTTTGTAACAGATCAGTTAACAGAAGTGAATCTAAAGTGTACATTATGTCCGAATACTGAATTCAAAACTGTTGAAGAAATATCCGAACATCGAAAAAATGACCATCAATTGCATGTATGTGACCTTTGTTCAAAATACTATAGTGGAAACAATCATTTATGGAAACATGTTAGTAGGCAACACAAAGGTCATCCGGATGTTACTTGTAGTTTATGTGCTCGTACATCGGCTTCTAAAGTTCACCTCAAAAGacatatgataaaatatcattctGATCCTGTAGATCAGCTTATTGacaaatcaaataatagtaattgtGCTGAAGTAAATTCCATTCATCAATGTATAAGATGTGACAAAGTATTTAGGATTAGGAGCCTATTAAAAAAACATCTCAAGTACTGCAAGGGTAAAAGAGATGCAATGGCAGTACCTAAAGAAAAAGGTCATTATCCTTGTCCAAAATGTGGTAAAACATTTGAATatcatacttatttaaatagaCATTTAAGGCACAGTCATTTAGTTCAACATTGTGAGTTATGTTCTGAAGATAAAACAGGTGAACACTTTGATAGTAAAATGCTATTAATGGATCATATCAGAGAGAAACATGGAAAAGATCCAGAGTTATGTTGTGATGTTGAAGGCTGTGGTAAAGTTATGAGAACAAAAGCAGATTGCCAGAAACATAAACGTGATCATATTCGTAAAGTGTTTTCGTATATATGTGAATTTTGTGGAGATATGCATTCTAATAAGAAAACCTATAGAAAACATTTGCGGCAGCGGCACAAAAGCAATACCCAATATTTATGTGGTGTGTGTATGGAAGTATGTGTTGATAATGATAGTTTGTCAAAGCACTTGCATGAAGCACACCCTCAAACTTTTACCAAATCTAATATTTGTCAGCTTTGTGGGAAAATTTTTAGTGTTGGAAGTAAAGTTGGGGAACATATTGACAAAATCcatggaaaaaatttaaaaccttgTAAAATATGTTGGAAAGTATTTAGCGATATGGATAAACTTAAAGACCATATTGAAAACCATCCAGCAAAAGAAGACTCCCCTAAAGCTTCTACCcctgtcaaaaaattaattgaacccAAACCAAAAACTCCGAAGCTATATGGACTTCCAAAAGAATTAGCTGAACTTGGTTTCAATGAAGAAcaacaagaaaatttaaaacgagATATAGATGATGTAACATCAGACATAAACACAAAGAGACTGAGGAAATTACATTCTTGTACAGTTTGTTACAAAAGTTTTAGATTTGAAACTGATTTATATGATCACAAAAGAGAAGAACATTCTATTATTGAAGATAGTTATATGGAAGAAGAAACCGAACGTAAGGAGGTACAACCATCTTTACTGAGAAATAAAAGAACAGTTTGCGGTTTATGTAAAAAAGAATGGGTTAGTTTGAAACATTTCTGGCAACATCTTATTAGAGCTCATCGTCCACAAGCTGCTTTTGTTTGTGGTATTTGTTGTCAAATAACTTCAAGCTATGATGACTTAGCATTGCATTTGGATAATCATCATCCAAATGCTAcagttatatcattattttcctGTGATGTTTGTGGTCGTAATCACAATGCATTTTCTAAACTTCAGAAACATCGTAATATTCATTCTAATGCACCACCTGCATTCCCTAAATATCATTGCGACGAATGTGAACTTGTAttcaattctaaattatttggcgaaaaacatattttgtgtcATGGTCCAGGGAGTAAATTATGCAAGGGAAAAGATTTATGTCAAGAAATGGATGATGATATGTTAGAAGAACAAATggaggaagaagaagaagaagaggaggaggaggaggaggaggaggaggaggacgatgaagaagaagaagttgaAAATGGTGGAGATATTGAAATAGAAACTAAAAgagacgatgatgatgatgatgatgatgaagaagAGGTTGAACAAATTGATGATGGGGATGAAGATGATAACGAACAAAATGATGAAGTAGAAGATGATGAAGAAACTGAACAGAATGCagaagatgatgatgatgatgatgatgatgatgaacaAAATGATGATATTGATGCTGAAGAAGATAAAGACCAGGTCGAAGccaatgatgatgatgatgatgatgatgatgatgatgtagAAGAAAATGGTGTTGATGATcaagatgatgatgatgagcAAGAGGACGATGATGATGAAGATGAAGTTTAG
- Protein Sequence
- MEANQSTQNNKMSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPMKQPVASMQLQQFLKAHRLSQKQSVQRGPPPLNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNSIRDDSPNPMDFLEIGVHAGNSIINNISRDIKPKTNFKSGGSLLSQSDSGSRRKNANPRKVARENDIESPGPSDHFLLSQIKQENLRQSCLLCERNFSNKYDLSQHISEIHGIEPADLHKLNGNLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICNDSKSLMEHVNTQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKSSNNDHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTLTTTSNSSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNEALICPKPDCKKLFVSQALQIEHQSHHEAQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHIDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRAIHNVEDQVSHFVTDQLTEVNLKCTLCPNTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSNCAEVNSIHQCIRCDKVFRIRSLLKKHLKYCKGKRDAMAVPKEKGHYPCPKCGKTFEYHTYLNRHLRHSHLVQHCELCSEDKTGEHFDSKMLLMDHIREKHGKDPELCCDVEGCGKVMRTKADCQKHKRDHIRKVFSYICEFCGDMHSNKKTYRKHLRQRHKSNTQYLCGVCMEVCVDNDSLSKHLHEAHPQTFTKSNICQLCGKIFSVGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEDSPKASTPVKKLIEPKPKTPKLYGLPKELAELGFNEEQQENLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEETERKEVQPSLLRNKRTVCGLCKKEWVSLKHFWQHLIRAHRPQAAFVCGICCQITSSYDDLALHLDNHHPNATVISLFSCDVCGRNHNAFSKLQKHRNIHSNAPPAFPKYHCDECELVFNSKLFGEKHILCHGPGSKLCKGKDLCQEMDDDMLEEQMEEEEEEEEEEEEEEEEDDEEEEVENGGDIEIETKRDDDDDDDDEEEVEQIDDGDEDDNEQNDEVEDDEETEQNAEDDDDDDDDDEQNDDIDAEEDKDQVEANDDDDDDDDDDVEENGVDDQDDDDEQEDDDDEDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_01170121;
- 80% Identity
- -