Cova007649.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063730.1:9329398-9333766[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.021 2.1 9.3 0.3 2 23 194 216 193 216 0.93 2 23 0.00096 0.099 13.5 0.2 1 23 247 270 247 270 0.95 3 23 0.82 85 4.2 2.2 2 23 277 299 276 299 0.96 4 23 8.7 8.9e+02 1.0 1.8 1 23 313 335 313 335 0.93 5 23 4.4e-05 0.0046 17.7 0.6 2 23 371 393 370 393 0.95 6 23 0.71 73 4.4 0.8 3 23 450 472 448 472 0.92 7 23 0.64 65 4.6 0.0 2 23 481 503 481 503 0.93 8 23 3.7e-05 0.0038 17.9 0.3 2 23 543 564 542 564 0.96 9 23 0.014 1.4 9.8 3.2 1 23 610 633 610 633 0.95 10 23 0.0017 0.18 12.7 1.6 2 23 640 662 639 662 0.96 11 23 0.00045 0.046 14.5 2.0 1 21 685 705 685 706 0.95 12 23 8.6e-07 8.9e-05 23.1 2.8 1 23 723 746 723 746 0.97 13 23 1.9 2e+02 3.1 1.2 3 23 751 777 750 777 0.79 14 23 2.6 2.6e+02 2.7 1.7 2 23 784 807 783 807 0.93 15 23 0.99 1e+02 4.0 4.0 1 23 814 837 814 837 0.96 16 23 0.22 23 6.0 0.6 1 23 843 866 843 866 0.91 17 23 0.13 14 6.7 0.1 3 23 876 897 875 897 0.87 18 23 7.5e-05 0.0077 17.0 0.2 2 23 903 924 902 924 0.96 19 23 0.0029 0.29 12.0 3.0 1 23 990 1013 990 1013 0.95 20 23 1.1 1.1e+02 3.9 0.4 2 23 1041 1063 1040 1063 0.94 21 23 1.2 1.3e+02 3.7 2.1 1 23 1069 1091 1069 1092 0.94 22 23 0.29 30 5.7 1.7 1 23 1101 1123 1101 1123 0.96 23 23 0.085 8.7 7.3 1.2 1 23 1133 1155 1133 1155 0.94
Sequence Information
- Coding Sequence
- atgtcaagaTTACATCACATTCAACCAGAAgtATCAATTTTTGCTGTTTCTCCAAATCCTCCATCTAAACCGAGAAAAATTAAGAGCGAACCACCCCCTTTAAAACCTGCAATATGGCCTACCAAGCAACCTGTAGCTTCAATGCAACTACAACAGTTCTTAAAAGCTCAGCGCTTGATGCAAAAGCATCCAGTGCAAAGAGGGCCACCGCCACTGAACAAAATGCAATATTTCGCTAACGACAGCCGTACAGAGTATcaaaaacaacaacagcaaaTGCATCAAAAGCTTATGCAACAACGTATGGCcaacaataatagtattcGAGAAGATTCACCAAATCCAATGGATTTTCTTGAAattggTGTTCATGCTGGTAACagtattatcaataatatctcGAAGGAAGTGAAGCCAAAATCCAATTTTAAATCGggTGGAACAGTATCACAATCGGATTCTGGTAGTCGTCGCAAAAATGCTAATCCTCGAAAAGTAGCTAgagaaaatgaaattgaaactCCAGGACCAGTTGatcattttttattgtctCAGATTAAACAAGAGAACCTCCGTCAATCATGTTTGCTCTGTGAACGGAATTTCGGTAACAAATTTGATTTAAGTCAACATATATCTGAAGTACATGGTATTGAACCATCAGATTTACATCAGTTAAATGGTAATTTGGGCGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACAGTATTCTTTTGTGAAGTGTGTACTAGAGAGTTTCAAGATAAAGCTAGTCTTTGGTTACATATGGTTAGAGGTCATAAACAAGAAGCTGCAGTGACATGTGGTGTATGTATGAAAATCTGCCATGACAGCAAATCTCTTATGGAGCATGTGAATACTCAACATCCTAAAAGTAGTGATACTGCTGATTCCATACAACGTAGGTATAGATGTCAAGTGTGTGCTAGACAACATGACaccaagaaaaaaatgatgagACATGTAGTTATTCATACAGTATATGATAACGATGGACAAATTATAGATcctgataaattaattataatcaacaataattttcatccAACCAAAGCTTCGAATAATGACCATTATACAATTAGCTGTCAAGTGTGTCACAAAGTATTTCCAAGTGAAGAAAAACTTTTACGGCATATGTCTTCAGTTCATTTGATGACTGGTTGTGATGATATGATAACCacaacagcagcaacaaccACTAGTAACTCTCAAAGTAGTTTTGTTAATCGTTGTGAATTGTGTGGTGATTCATGTGGTTCGCGTACTGAAAAATGGTGGCACGTCCTCAAAGAGCATGGCACTAATGAAACACTCATATGCCCAAAACcaaattgtagaaaattattcgtGTCACAATCTTTACAAATTGAGCATCAGACTCATCATGAAACCCAAGGAGACATTCCTAATACCTGTGAAGTGTGCGGGCGGTTATGGCCTAATCGAGGAGATTTTTACAAACACATAATGGCTGTGCATGCTGAATGTATGCCTCTCTTGTGTGGTATATGTTTGAAAGTTCACTTAGATGTACCAAAACTTAGAGAACATATAAAAGAGAAACACGAACCTTTAGTGTCAAAAGAAAATGCTATATATTGTGACATATGTGGGCGCACTTATACCAAATGGTCAAAAATGATGAGGCATAGAGCAATACATAATGTTGAAGATCAAGTATCTCATTTTGTTACAGATCAACTTACAGAAGTAAATTTAAAGTGTACACTGTGCCCAGATACTGAATTCAAAACTGTTGAAGAGATATCTGAACATCGTAAAAACGACCATCAACTACACGTATGTGATCTTTGTTCAAAATACTATAGTGGTAACAATCATTTGTGGAAGCATGTTAGTAGACAACACAAAGGCCATCCTGATGTCACATGTAGTTTATGTGCCCGTACATCTGCTTCTAAAGTTCATCTCAAACGACACATGATAAAATATCACTCTGATCCAGTAGACCAACTTATTGACAAGTCAAACAGTAGTAACCGTGCGGAAATAAATTCCATTCACCAATGTATGAGATGTGACAAAGTGTTTAGAATTAGGAGTTTATTAAAGAAACATTTAAAGTATTGTAAAGGTAAAAGAGATGCCGTGCCGATACCCAAAGAAAAAGGGCATTATCCTTGTCCAAAATGTGGTAAAACTTTTGAATATCAGACTTATTTAAATAGACATTTAAGGCACAGTCATCTAGTACAACATTGTGAGATATGTTCCGAGGACAAAACTGGCGaacatttcgataataaaatgttattgatgGATCATATTAGAGAAAAACACAGAACCGATCCAGAGTTAACTTGTGACATTGATGGTTGTAACAAAGTTATGAGAACAAAAGTCGATTGTCAAAAACACAAACGTGATCATGTTCGTAAAGTTTTTTCGTATGTGTGTGAATTTTGTGGAGATATGCACTCAAATAAGAAAACTTATCGAAAACACTTGCGGCAGCGACACAAAGGCAATACTCAGTATTTATGTGGTGTATGTATGGAAGTATGTGTTAACAATGATGGTTTAACTAAACATTTACACGAAGCGCATCCTCAAACATTCACTAAATCAAACATCTGTCAGCTTTGTGGGAAAATGTTTACAGTTGGAAGTAAAGTCGGGGAACACATAGATAAAATAcatggaaaaaatttaaaaccttGCAAAATCTGTTGGAAAGTATTCAGTGATATGGATAAACTTAAGGATCATATTGAAAACCATCCGGCCAAAGAAGATTCTCCCAAAGCAGCTACACCTATCAAAAAGACAATAGAGCCAAAACCAAAAACTCCTAAGCTGTATGGTCTTCCCAAAGAACTAGCCGAACTCGGCTTTAATGAAGAGCAACAAGAGAACTTAAAAAGAGATATAGATGATGTTACATCAGACATAAATACAAAGAGACTGAGAAAATTACATTCATGTACGGTTTGTTACAAAAGCTTCAGGTTTGAAACTGATCTGTATGATCACCGAAGAGAAGAACATTCTATTATTGAAGACAGTTATATGGAAGAGGAAACGGAACGCAAAGAACAACCGTCTGTTgtaacaaaaagtaaaaaaactgTGTGCGGGATATGTAGAAAAGAATGGATTagtttgaaacatttttggCAACATTTAATAAGGGCTCACCGCCCAGAAGCTGCTTTTGTTTGCGGTATTTGTTGTCAAATAACTACAAGCTATGATAATTTGTCTTTACATCTAGATAATCACCATCCGAACGCCACAGTTCTGTCATTATTTTCTTGTGACGTTTGTGGTCGTAATCACAATGCATTTTCAAAACTTCAAAAACATCGTATTATTCATTCGAATGCACCGACTGCATCTCCGAAATTTCATTGTGACGAGTGTGAACTGGTTTTTAATTCAAAGTCATTTGGGGAAAAACATGTTTTGTCCCATGGTGCCGGTGGTAAATTATGCAAAGGCAAAGATCTGTGTCAAGAAATGGATGATGATATGTTGGAGGAACAAttggaagaagaagaagacgacgatgatgatgatgatgatggtaGGGATGctgaaatggaaaataaagcagatgatgatgatgacgatgagGAAGAAGAGGTTGAACAAAATGATGATGGGGAAGACGATGATAATGAACAAAATGATGAAGTAGATGAAGATGAAACTGAACAGAATgccgatgatgatgatgatgaagaaGATGAAGATGAACAAAATGATGATGTAGAAGAAGACGTAGAAGAAAATGGTGTTGATGATCAAGATGATGACGAGGATGAAGAACAAGAGgaggatgatgatgatgacgatgatgtCTAA
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPSKPRKIKSEPPPLKPAIWPTKQPVASMQLQQFLKAQRLMQKHPVQRGPPPLNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNSIREDSPNPMDFLEIGVHAGNSIINNISKEVKPKSNFKSGGTVSQSDSGSRRKNANPRKVARENEIETPGPVDHFLLSQIKQENLRQSCLLCERNFGNKFDLSQHISEVHGIEPSDLHQLNGNLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICHDSKSLMEHVNTQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNDHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTAATTTSNSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNETLICPKPNCRKLFVSQSLQIEHQTHHETQGDIPNTCEVCGRLWPNRGDFYKHIMAVHAECMPLLCGICLKVHLDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRAIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNSSNRAEINSIHQCMRCDKVFRIRSLLKKHLKYCKGKRDAVPIPKEKGHYPCPKCGKTFEYQTYLNRHLRHSHLVQHCEICSEDKTGEHFDNKMLLMDHIREKHRTDPELTCDIDGCNKVMRTKVDCQKHKRDHVRKVFSYVCEFCGDMHSNKKTYRKHLRQRHKGNTQYLCGVCMEVCVNNDGLTKHLHEAHPQTFTKSNICQLCGKMFTVGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEDSPKAATPIKKTIEPKPKTPKLYGLPKELAELGFNEEQQENLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHRREEHSIIEDSYMEEETERKEQPSVVTKSKKTVCGICRKEWISLKHFWQHLIRAHRPEAAFVCGICCQITTSYDNLSLHLDNHHPNATVLSLFSCDVCGRNHNAFSKLQKHRIIHSNAPTASPKFHCDECELVFNSKSFGEKHVLSHGAGGKLCKGKDLCQEMDDDMLEEQLEEEEDDDDDDDDGRDAEMENKADDDDDDEEEEVEQNDDGEDDDNEQNDEVDEDETEQNADDDDDEEDEDEQNDDVEEDVEENGVDDQDDDEDEEQEEDDDDDDDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_01330814; iTF_00340860; iTF_01499861;
- 80% Identity
- -