Rpad010371.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008884.76059:50725-59929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0019 0.24 12.5 0.4 2 23 210 232 209 232 0.93 2 24 0.00095 0.12 13.4 0.2 1 23 263 286 263 286 0.95 3 24 0.079 10 7.4 0.5 2 23 293 315 292 315 0.95 4 24 8.5 1.1e+03 1.0 1.8 1 23 329 351 329 351 0.93 5 24 4.4e-05 0.0055 17.6 0.6 2 23 387 409 386 409 0.95 6 24 0.29 36 5.6 0.7 2 23 436 458 436 458 0.94 7 24 0.18 23 6.2 0.6 3 23 466 488 464 488 0.93 8 24 0.82 1e+02 4.2 0.1 2 23 497 519 497 519 0.93 9 24 3.3e-05 0.0041 18.0 0.6 2 23 559 580 558 580 0.96 10 24 0.014 1.7 9.8 3.2 1 23 626 649 626 649 0.95 11 24 0.0017 0.21 12.6 1.6 2 23 656 678 655 678 0.96 12 24 0.0066 0.83 10.8 1.6 1 21 701 721 701 722 0.91 13 24 8.9e-06 0.0011 19.8 4.0 1 23 739 762 739 762 0.96 14 24 0.98 1.2e+02 3.9 0.4 3 23 767 793 766 793 0.81 15 24 7.6 9.5e+02 1.1 3.0 3 23 801 823 799 823 0.91 16 24 0.98 1.2e+02 3.9 4.0 1 23 830 853 830 853 0.96 17 24 0.69 87 4.4 0.4 1 23 859 882 859 882 0.91 18 24 0.081 10 7.3 0.1 3 23 892 913 891 913 0.83 19 24 7.3e-05 0.0092 16.9 0.2 2 23 919 940 918 940 0.96 20 24 0.0057 0.72 11.0 3.1 1 23 1006 1029 1006 1029 0.95 21 24 0.48 60 4.9 0.4 2 23 1058 1080 1057 1080 0.95 22 24 0.37 47 5.3 1.7 1 23 1086 1108 1086 1109 0.94 23 24 0.37 47 5.2 1.1 1 23 1118 1140 1118 1140 0.95 24 24 0.0053 0.67 11.1 1.0 1 23 1150 1172 1150 1172 0.97
Sequence Information
- Coding Sequence
- ATGGAATCCAATCAGTCTATACAAAATAATAAAATGTCACGATTACATCACATTCAACCAGAAGTATCAATTTTTGCTGTTTCTCCAAATCCTCCTCCCAAACCCAGGAAAATTAAAAGTGAACCTCCTCCTTTAAAACCAGCAATATGGCCTTCCAAGCAACCTGCAGCATCTATGCAATTACAACAATTTTTAAAAGCTCAGCGTTTGAGTCAAAAGCAACTTGTTCAAAGGGGACCTCCACCACCACTTAACAAAATGCAATATTTTGCTAATGATAGCCGTACAGAGTATCAAAAACAACAACAGGCAATGCATCAAAAAATGATGCAGGAACGTGCCATAATCAGTAACCATACTAACAATAATAGTATACGGGAAGATTCTCCAAACCCAATGGATTTTCTAGAGATTGGAGTTCATGCTGATAATTGTATCATAAATAATATTCCGAGGGATAAACCAAGATCAAATTTTAAATCGGGAGGAAGTATATCACAATCAGATTCTGGTAGTCGTCGCAAGAATGCTAATCCAAGAAAAGTAGCTAGAGAAAATGAAATTGAACCACCAGGACCCAGTGATCATTTTCTGCTTTCTCAGATTAAACAAGAAAATCTTCGTCAGTCCTGTTTGTTATGTGAACGGAATTTTAGCAATAAAAATGATCTGAGTCAACATATATCTGAAGTGCATGGTATTGAACCTTCAGATTTACATAAACTAAATGGACATTTAGGTGAAGACGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACTGTGTTTTTTTGTGAAGTATGTACTAGAGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTTAGAGGTCACAAACAGGAAGCTGCAGTGACATGTGGAGTGTGTATGAAAATTTGTAGTGATAGTAAATCTTTAATGGAGCATGTAAATATCCAACATCCTAAAAATTGTGATACCGCCGATTCCGTACAACGTAGGTATAGATGTCAAGTTTGTGCACGGCAACATGATACCAAGAAAAAAATGATGAGACATGTGGTCATCCACACAGTATACGACAATGATGGTCAAATTATTGATCCTGATAAATTAATTATAATTAACAATAATTTTCATCCAACTAAATCTTCAAATAATGAGCATTATACAATTAGCTGTCAAGTCTGTCATAAAGTATTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCTGTTCATCTGATGACTGGTTGTGATGATATGATTACCACAACGGCTGTTACAACCACTGGCAATTCTCAAAGTAGTTTTGTGAATCGCTGTGAATTATGTGGTGAATCATGTGGTTCTCGTACAGAAAAATGGTGGCATGTTCTTAAAGAGCACGGCACTAATGAAACGCTTATATGTCCAAAACCAGACTGTAGAAAATTATTTGTTTCACAATCTTTACAAATTGAACATCAATCTCATCATGAAACCCAAGGTGAACTTCCTAATACTTGTGAAGTATGTGGTCGGTTATGGCCTAATAGAAATGATTTTTACAAACACATAATGGCTGTACATGCCGAATGTATGCCCTTATTATGTGGTATATGTCTAAAAGTTCATGTGGATGTACCAAAACTCAGAGAACATATAAAAGAGAAACACGAACCTTTAGTATCCAAGGAGAATGCTATTTATTGTGATATATGTGGTCGCACTTATACCAAATGGTCAAAAATGATGAGGCATAGATCAATTCATAATGTTGAAGACCAAGTATCTCATTTTGTAACAGATCAATTAACTGAAGTGAATCTAAAATGTACATTATGTCCTGATACTGAATTTAAAACTGTTGAAGAAATATCTGAACACAGAAAGAATGACCATCAACTACATGTATGTGATCTTTGTTCAAAATATTATAGTGGAAACAATCATTTATGGAAGCACGTTAGTAGACAACACAAAGGTCATCCAGATGTCACATGTAGCTTATGTGCACGTACATCTGCTTCTAAAGTTCACCTTAAAAGGCATATGATCAAATATCATTCTGATCCCGTAGATCAGCTTATAGACAAATCAAATAATAGTATTTGTGCAGAATTAAATGCCATTCACCAATGTATAAGATGTGATAAAGTGTTTAGGATTAGAAGTTTACTGAAGAAACATCTTAAATATTGCAAAGGTAAAAGAGATGTAATGCCAATACCCAAAGAAAAAGGTCATTATCCTTGTACAAAATGTGGTAAAACATTTGAATATCAAACTTATTTAAATAGACATTTAAAGCATAGTCACTTAGTTCAGTACTGTGAGATATGTTCTGAAGATAAAACTGGTGAACATTTTGATAATAAAATGTTATTAATGGATCATATCAGAGAAAAACATGGAAACGATCCAGAGTTGTGTTGTGATGTTGAAGGTTGTGACAAAGTTATGAGAACAAAAGTTGATTGCCAGAAACATAAACGTGATCATGTTCGTAAAGTATTTTCATATGTTTGTGAATTTTGTGGAGATATGCATTCAAATAAAAAAACCTATAGAAAACACTTGAGGCAGCGACATAAAGAAAATACTCAGTATTTATGTGGTGTGTGTATGGAAGTATGTGTAGACAATGACGGTTTATCAAAACACTTACATGAAGCACACCCTCAGACATTTTCCAAATCAAATATTTGCCAGATTTGTGGGAAAATGTTTACTCTTGGAAGTAAAGTTGGAGAACACATAGATAAAATTCATGGAAAAAATTTAAAACCTTGCAAAATCTGTTGGAAAGTATTCAGCGATATGGATAAACTTAAAGATCACATTGAAAATCATCCAGCAAAAGAGGAATTCCCCAAAGTAGTTACTCCTGTGAAAAAACCAATAGAACCAAAACCAAAAACTCCCAAACTATATGGTCTTCCTAAAGAACTTGCTGAGCTTGGTTTCAATGAAGAGCAACAGGAGAGTTTGAAACGAGATATAGATGACGTTACTTCAGATATAAATACAAAGAGACTGAGAAAATTACATTCTTGTACAGTTTGCTACAAAAGTTTTAGATTTGAAACAGATTTATATGATCACAAACGAGAAGAGCATTCGATTATTGAAGACAGTTATATGGAAGAAGAAACTGAGCGCAAGGAACAACAGCCATCTTCTATACCAAAAAGTAATAAAACCGTGTGTGGTATATGTAAAAAAGAATGGATAAGTTTGAAACATTTTTGGCAACATTTAATAAGAGCTCATCGCACAGAAGCTGCATTCGTCTGTGGTATTTGCTGTAAAATCACTAAAAATTATGATGAGTTAGCTTTACACTTAGATAATCACCATCCGAATGCCACAGTTTTGTCGTTATTTGCTTGTGATGTTTGTGGTCGCAATCACAATGCATTTTCGAAACTACAAAAACATCGTATTATACATTCAACTGCACCACCTACGTTCCAAAAATATCATTGTGATGAGTGTGAACTAGTTTTTAATTCAAAGTCATATGGAGAGAAACATATTTTGAGCCATGGACCTGGTAGTAAATTGTGCAAAGGTAAAGATTTGTGTCAAGAAATGGATGATGACATGTTGGATGAACAAATTGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGATGGTGTAGATGTTAAAATAGAAAATAAAGGTGACGATGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAAGATGTAGAACAAAACGACGATGGAGATGAAGATAATGATAATGAGCAATTTGATGATGTTGAAGACGAAGAAGACATAGAACAGAATGCAGAAGAAGACGACGACGATGATGAACAAAATGACGATGTTGATGCCGAGGAAGATAAGGTAAAGGTTGAAGCAGATGATGACGAAGAAGAAGACGTGGAGGAAAATGGTGTTGATGATCAAGATGACGATGAAGATGAAGAACAAGAAGAGGAAGAAGATGACGATGATGAAGTCTAA
- Protein Sequence
- MESNQSIQNNKMSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPSKQPAASMQLQQFLKAQRLSQKQLVQRGPPPPLNKMQYFANDSRTEYQKQQQAMHQKMMQERAIISNHTNNNSIREDSPNPMDFLEIGVHADNCIINNIPRDKPRSNFKSGGSISQSDSGSRRKNANPRKVARENEIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKNDLSQHISEVHGIEPSDLHKLNGHLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNIQHPKNCDTADSVQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKSSNNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTAVTTTGNSQSSFVNRCELCGESCGSRTEKWWHVLKEHGTNETLICPKPDCRKLFVSQSLQIEHQSHHETQGELPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHVDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSICAELNAIHQCIRCDKVFRIRSLLKKHLKYCKGKRDVMPIPKEKGHYPCTKCGKTFEYQTYLNRHLKHSHLVQYCEICSEDKTGEHFDNKMLLMDHIREKHGNDPELCCDVEGCDKVMRTKVDCQKHKRDHVRKVFSYVCEFCGDMHSNKKTYRKHLRQRHKENTQYLCGVCMEVCVDNDGLSKHLHEAHPQTFSKSNICQICGKMFTLGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEEFPKVVTPVKKPIEPKPKTPKLYGLPKELAELGFNEEQQESLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEETERKEQQPSSIPKSNKTVCGICKKEWISLKHFWQHLIRAHRTEAAFVCGICCKITKNYDELALHLDNHHPNATVLSLFACDVCGRNHNAFSKLQKHRIIHSTAPPTFQKYHCDECELVFNSKSYGEKHILSHGPGSKLCKGKDLCQEMDDDMLDEQIEEEEEEEEEEEEVEEDGVDVKIENKGDDEEEEEEEEEEEEDVEQNDDGDEDNDNEQFDDVEDEEDIEQNAEEDDDDDEQNDDVDAEEDKVKVEADDDEEEDVEENGVDDQDDDEDEEQEEEEDDDDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_00135639;
- 80% Identity
- -