Tsal009855.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- -
- Assembly
- GCA_956483605.1
- Location
- OY101432.1:42155927-42160695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00083 0.09 13.6 0.4 2 23 194 216 193 216 0.93 2 22 0.0015 0.17 12.8 0.2 1 23 246 269 246 269 0.95 3 22 0.078 8.4 7.4 0.5 2 23 276 298 275 298 0.95 4 22 8.4 9.1e+02 1.0 1.8 1 23 312 334 312 334 0.93 5 22 4.3e-05 0.0046 17.7 0.6 2 23 370 392 369 392 0.95 6 22 0.29 31 5.7 0.7 2 23 418 440 418 440 0.94 7 22 0.081 8.7 7.4 0.6 3 23 448 470 446 470 0.93 8 22 0.81 87 4.2 0.1 2 23 479 501 479 501 0.93 9 22 3.2e-05 0.0035 18.1 0.6 2 23 541 562 540 562 0.96 10 22 0.013 1.4 9.8 3.2 1 23 608 631 608 631 0.95 11 22 0.0011 0.12 13.3 1.9 2 23 638 660 637 660 0.96 12 22 0.00015 0.016 16.0 2.1 1 21 683 703 683 704 0.95 13 22 8.8e-06 0.00095 19.8 2.9 1 23 722 745 722 745 0.97 14 22 3.8 4.1e+02 2.1 0.5 9 23 761 776 749 776 0.88 15 22 5.6 6.1e+02 1.6 4.6 1 23 782 806 782 806 0.94 16 22 6.3 6.8e+02 1.4 3.7 1 23 813 836 813 836 0.89 17 22 0.079 8.6 7.4 0.1 2 23 874 896 874 896 0.87 18 22 4.8e-05 0.0052 17.5 0.2 2 23 902 923 901 923 0.96 19 22 0.0056 0.61 11.0 3.1 1 23 990 1013 990 1013 0.95 20 22 0.9 97 4.1 0.2 2 23 1033 1055 1032 1055 0.94 21 22 0.37 40 5.3 1.1 1 23 1093 1115 1093 1115 0.95 22 22 0.027 2.9 8.9 0.8 1 23 1125 1147 1125 1147 0.97
Sequence Information
- Coding Sequence
- atgtcgCGATTACATCATATTCAACCAGAAgtATCCATTTTTGCTGTTTCACCAAATCCTTCACCTAAACcaagaaaaattaaaagtgaaCCTCCACCTTTAAAACCTGCAGTATGGCCTGTCAAGCAACCTGTGGCATCTATGCAATTACAACAGTTCTTAAAAGCTCAGCGTTTGAGTCAAAAGCAACCCGTACAAAGAGGGCCCCCAGCACTTAACAAAATGCAATATTTTGCTAATGATAGTCGTACAGAAtatcaaaaacaacaacaacaaatgcATCAAAAACTTATGCAACAGCGTATGGCTAATAATAACAGTATCCCGGAAGATTCACCGAATCCCATGGATTTTCTAGAAattggtGTCCATGCTGGTAAcactattatcaataatattcctaaaaatgtaaaaccaaaATCTAATTTCAAAATGggAGGAAGTATAGGATCATCTGACTCCAGTAGTCGTCGAAAGAATGCTAATCCTAGAAAAGTAGCTCGAGAAAATGAAATTGAGATACCAATACCAAATGATCATTTTCTATTATCACAGATTAAGCAAGAAAACCTCCGTCAATCCTGTTTATTGTGTGAACGAAATTTTAGCAATAAATACGATCTAAGTCAACATATATCAGAAGTGCATGGTATTGAACAATCAGATTTACATCAATCAAATGGACATTTAGAAGATGAAGAATTTGCTGAAAGTATGATGGAAGCAgaaactgtatttttttgtgAAGTATGTACTAGAGAATTTCAAGATAGAGCTAGTCTTTGGTTACATATGGTTAGAGGGCACAAACAAGAAGCTGCAGTGACTTGTGGAGTATGTATGAAAATTTGTAGTGATAGTAAATCACTTATGGAACACGTCAATATCCAACACCCTAAAAGTAGTGATACAGCTGATTCTATACAGCGTAGGTATAGATGTCAGGTTTGTGCTCGGCAACATGATACTAAGAAAAAAATGATGAGACATGTAGTTATTCACACAGTTTATGATAATGATGGTCAGATTATAGATcctgataaattaataataatcaacaataattttcatCCAACCAAAGCTTCAAACAATGAACATTACACAATTAGTTGTCAAGTTTGTCACAAGGTGTTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCGGTTCATCTTATGACTGGTTGTGATGATATGATTACTACAACATCCCTATCAAGTGGTAATTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGTGAGTCATGTGGTTCTCGTACCGAAAAATGGTGGCATGTGCTCAAAGAACACGGCACTAATGAAAAACTTATATGTCCAAAACCAGATTGTAAAAAACTATTTGTCTCACAATCTTTACAAATTGAACATCAATCTCACCATGAACTCCAAGGTGATCTGCCTAACACATGTGAAGTGTGTGGGCGGTTGTGGCCTAAtagaaatgatttttataaacacATAATGGCTGTGCATGCTGAATGTATGCCTTTGTTGTGTGGTATTTGCTTAAAAGTTCATATAGATGTACCGAAACTTAGAGAACACATAAAAGAGAAACACGAGCCTTTAGTATCAAAAGAAAATGCCATATATTGTGACATATGTGGCCGAACATACACCAAATGGTCAAAAATGATGAGACATAGATCAATACACAATGTTGAAGACCAGGTGTCTCATTTTGTAACAGATCAACTAACAGAAGTGAACCTGAAATGTACATTATGTCCAGATACAGAATTTAAAACTGTTGAAGAGATTTCTGAACACCGTAAAAATGACCATCAACTGCATGTGTGTGATCTTTGTTCTAAATATTACAGTGGTAACAATCATTTATGGAAGCACGTAAGTAGGCAACATAAAGGTCATCCAGACGTCACATGCAGTTTATGTGCACGCACATCTGCTTCTAAAGTTCACCTCAAACGACATATGATGAAATATCATTCTGATCCTGTTGATCAACTTATAGATAAGTCAAACAATAGTAGTTGCGCAGAAATAAATGCTACTCATCAGTGTATGAAATGTGATAAAGTGTTCAGGATTAGAAGTTTGTTAAAGAAACACTTAAAATATTGTAAGGGTAAAAGAgattcgataacaataatacccAAAGAAAAAGGTCATTACCCTTGTTCAAAATgtggtaaaatatttgaataccaAACTTACTTAAATAGGCATTTAAGGCACAGTCATTTAGTTCAGCATTGTGAAATATGTTCAGAAGATAAAACTGGTGatcattttgataataaaacgttattgatGGATCATATCagagaaaaacataaaaatgatcCAGAGTTTTGTTGCGATTTTGAAGGTTGTGACAAAGTTATGAGAACAAAGGCCGATTGCCAAAAACATAAACGTGACCATGTTCGTAAAGTGTTTTCATATGTATGTGAATTTTGTGGAGATTTACactcaaataaaaaaacctacagAAAACACTTACGGCAACGACACAAAAGCAATACCCAATATTTATGTGGAATGTGTATGGAACTATGTGTAGACAGCGATggtttatcaaaacatttacaTGAAGCACACCCTCAAATATTTACCAAACCAAATACTTGTCAACTTTGTGGGAAAATGTTCACAGTTGGAAGTAAAGTAGGAGAGCACATAGATAAAATTCATgggaaaaatttaaaacctTGCAAAATCTGTTGGAAAGTATTCAGTGATTTGGAGAAACTTAAAGATCACATTGAAAACCATCCAGCAAAAGAAGATTCCCCTAAAGTAGTTACACCTgtcaaaaaattaatgattgaCTCTAAACCAAAAACTCCAAAACTATACGGTCTTCCTAAAGAATTAGCAGAACTCGGTTTTAATGAAGAACAACAGCAGAGTTTAAAACGAGATATAGATGATGCTTCATCagacataaatacaaaaagACTGAGAAAATTACATTCTTGTACAGTTTGTTACAAAAGCTTTAGATTTGAAACAGATTTGTATGATCACAAAAGAGAAGAGCATTCCATTATTGAAGATGGTTATAATATGGAAGAAGACAGTagtaattttggaaaaatagtGTGTGGAATATGCCGGAAAGAATGGATAAGTTTGAAACATTTTTGGCAGCATTTAATAAGGGCTCATCGTGCAGAGGCTGCTTACGTTTGTGGACTTTGTTGCCACATAAGTAAAAGTTATAATGGTTTGTCATTACATCTAGATAATCACCATCCAAATGCCACTGTATCTTCATTATTTGCCTGTGATGTTTGTGGTCGTAATCATAATGCGTTTTCAAAACTTCAAAAACACCGTATTATTCATTCAAATGCGCCGACTGCGTCTCCAAAATTCCATTGTGACGAGTGTGAACTTGTGTTCAATACAGAGTCTTTTggagaaaaacatattttaacccaTGGTCCTGGTGGTAAATTGTGCAAAGGTAAAGATTTGTGTCAAGAAATGGATGATGACATGTTAGAGGAACAAATGGAAGAGGAAGAAATTGAAGATGGTGAAACAGAAAATAAAgttgatgacgatgatgatgatgatgatgaagatgatgatgatgatgatgaagaaGAAATTCTACACAATGATGAAGATGATGACATTGAACAAAATGATGAATTAGAAGATGATGATGAAACTGAACATAATGCagaagatgatgatgatgaacaAAATGCAGAAGACGATTACGAAGAACAAAATGCTGAAGATGCCAAAGCACATATTGAAATAGATGATGAAGATGAGGTTGAAGAAAATGGTATTGATGATGACGAAGATGATGAGGATGACGATGAAGTCTAA
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPSPKPRKIKSEPPPLKPAVWPVKQPVASMQLQQFLKAQRLSQKQPVQRGPPALNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNSIPEDSPNPMDFLEIGVHAGNTIINNIPKNVKPKSNFKMGGSIGSSDSSSRRKNANPRKVARENEIEIPIPNDHFLLSQIKQENLRQSCLLCERNFSNKYDLSQHISEVHGIEQSDLHQSNGHLEDEEFAESMMEAETVFFCEVCTREFQDRASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNIQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTSLSSGNSQSSFVNRCELCGESCGSRTEKWWHVLKEHGTNEKLICPKPDCKKLFVSQSLQIEHQSHHELQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHIDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMMKYHSDPVDQLIDKSNNSSCAEINATHQCMKCDKVFRIRSLLKKHLKYCKGKRDSITIIPKEKGHYPCSKCGKIFEYQTYLNRHLRHSHLVQHCEICSEDKTGDHFDNKTLLMDHIREKHKNDPEFCCDFEGCDKVMRTKADCQKHKRDHVRKVFSYVCEFCGDLHSNKKTYRKHLRQRHKSNTQYLCGMCMELCVDSDGLSKHLHEAHPQIFTKPNTCQLCGKMFTVGSKVGEHIDKIHGKNLKPCKICWKVFSDLEKLKDHIENHPAKEDSPKVVTPVKKLMIDSKPKTPKLYGLPKELAELGFNEEQQQSLKRDIDDASSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDGYNMEEDSSNFGKIVCGICRKEWISLKHFWQHLIRAHRAEAAYVCGLCCHISKSYNGLSLHLDNHHPNATVSSLFACDVCGRNHNAFSKLQKHRIIHSNAPTASPKFHCDECELVFNTESFGEKHILTHGPGGKLCKGKDLCQEMDDDMLEEQMEEEEIEDGETENKVDDDDDDDDEDDDDDDEEEILHNDEDDDIEQNDELEDDDETEHNAEDDDDEQNAEDDYEEQNAEDAKAHIEIDDEDEVEENGIDDDEDDEDDDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_00309044;
- 80% Identity
- -