Hcor010760.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029359.1:34350706-34368300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0018 0.17 12.5 1.3 1 23 207 230 207 230 0.93 2 24 0.00089 0.088 13.5 0.2 1 23 261 284 261 284 0.95 3 24 0.098 9.6 7.1 0.5 2 23 291 313 290 313 0.95 4 24 8.1 7.9e+02 1.0 1.8 1 23 327 349 327 349 0.93 5 24 2.6e-05 0.0026 18.3 0.7 2 23 385 407 384 407 0.95 6 24 0.39 38 5.2 1.1 2 23 435 457 435 457 0.94 7 24 1.2 1.2e+02 3.6 0.4 3 23 465 487 463 487 0.91 8 24 1.4 1.4e+02 3.4 0.0 2 23 496 518 496 518 0.90 9 24 0.00011 0.011 16.3 0.3 2 23 558 579 557 579 0.96 10 24 0.013 1.3 9.8 3.2 1 23 625 648 625 648 0.95 11 24 0.0029 0.28 11.9 1.6 2 23 655 677 654 677 0.96 12 24 0.00042 0.041 14.5 2.0 1 21 700 720 700 721 0.95 13 24 1e-05 0.001 19.5 3.5 1 23 738 761 738 761 0.97 14 24 2.2 2.1e+02 2.8 1.2 7 23 775 792 765 792 0.85 15 24 8.4 8.3e+02 1.0 3.4 3 23 800 822 798 822 0.91 16 24 9.1 9e+02 0.9 3.2 1 23 829 852 829 852 0.93 17 24 0.19 18 6.2 0.9 2 23 859 881 858 881 0.89 18 24 0.079 7.8 7.3 0.2 2 23 890 912 890 912 0.87 19 24 0.00049 0.049 14.3 0.5 2 23 918 939 917 939 0.95 20 24 0.006 0.59 10.9 2.9 1 23 1005 1028 1005 1028 0.95 21 24 0.48 48 4.9 0.6 2 23 1057 1079 1056 1079 0.95 22 24 0.79 78 4.2 2.0 1 23 1085 1107 1085 1108 0.94 23 24 0.15 15 6.5 1.7 1 23 1117 1139 1117 1139 0.96 24 24 0.61 60 4.6 0.7 1 23 1149 1171 1149 1171 0.88
Sequence Information
- Coding Sequence
- ATGGAACTTAATCAGTCTAGACAAAATAATAAAATGTCGCGCTTACATCACATTCAACCAGAGGTATCAATTTTTGCAGTCTCACCTCTATCAACGCCTAAACCTAAAAAAGTAAGAAGTGAACCACCACCTTTAAAACCAGCAATATGGCCAGCTAGACAACCAGTAGCTTCTATGCAGTTACAACAGTTCTTGAAAGCTCAGCGCCTAACTTCTCAAAAGCTCCCAGTACAAAGAGGTCCTCCTCCACTAAACAAAATGCAATATTTTGCCAACGATAGCCGTAATGAGTATCAAAAACAACAACAGCAAATGCATCAAAAACTTATGCAACAGCGTATGGCAGCCAACAATAATAGTATTCGGGAAGATTCGCCAAACCCTATGGATTTTCTTGAGATTGCCGTTCATGCTGGTAACAGTATTATTAATAATATTTCAAGAGACTCTAAACAAAAAGCTAATTCTAAACCGGCAAGAACTCTATCCCAACCAGATTCTAGCAGTCGTCGCAAGAACGCAAATCCAAGAAAAGTAGCTCGAGAAAATGAAACTGTTAGACCACCAGAATCCAGTAATCATTTCCTGTTATCTCAGTGTGAACAAGAAAACCTTCCTCATTCGTGTTTGTTGTGTGAGCGTAATTTCAGCAACAAATTTGATCTTAGTCAGCATATATCTGGAATACATGGCATTGAACCAGCTGATTTGCATAAATTGAACGGTAATTTAGGTGTAGATGAAGATCTTGCTGAAAGTATGATGGAAGCTGAAACGGTATTCTTTTGTGAAGTATGTACGAGAGAATTTCAAGATAAAGCTAGTCTCTGGTTACATATGGTTAGGGGCCATAAACAAGAAGCTGCAGTGACATGTGGGGTGTGTATGAAAATCTGTAGTGATAGTAGATCTCTTATGGATCATGTGAATATTCAACATCCTAAAAGTAGTGACACTGCTGATTCGATACAACGTAGGTACAGGTGTCAAGTTTGTGCTCGACAACACGACACCAAGAAAAAAATGATGAGACATGTTGTCATTCACACGGTGTACGATAACGATGGACAAATTATAGAACCTGATAAGTTAATTATAATTAATAATAATTTTCACCCAACCAAAACATCAAATAACGAACATTATACAATAAGTTGTCAAGTATGTCACAAAGTGTTTCCTAGTGAAGACAAACTGTTGAGACACATGTCTTCGGTTCATTTGATGACAGGTTGTGATGATATGATAACTACAACAGCTGCAGTTAGTACTGTTAATTCTCCTCAGAATAGTTTTGTAAATCGTTGTGAATTATGTGGTGAATCATGTGGTTCTCGCACTGAAAAATGGTGGCATGTGCTCAAAAAGCATGGTAATGACGAATCACTTATTTGCCCTATACCAGTTTGTAGAAAATTGTTTGTATCCCAATCTTTACGAATTGATCATAAATCTCATCATGAAACCCAAGGTGAATTTCCTAATACCTGTGAGATATGTGGGCGGTTATGGCCAAGTTTAAATGATTTTTACAAACACATAATGGCGGTTCATGCTGAGTGTATGCCTTTAATTTGTGGTATATGTCTTAAAGTTCACCTAGATGTAGCTTCACTTAGAGAACATCTTAAAGAAAAACACGAGCCATTAGTTTCAAAAGAGAATGCTGTATATTGTGACATATGTGGCCGCATCTATACCAAGTGGTCAAAAATGATGAGGCATCGATCAATCCATAACGTTGAAGACCAGGTATCTCATTTTGTAACAGACACTCTAACAGAAGTAAATCTGAAGTGCACGTTGTGTCCAGATACTGAATTTAAAACTGTAGAAGAGATATCAGAACATCGTAAAAATGATCATCAATTGCATGTGTGTGATCTTTGTTCAAAATACTACAGTGGTAACAATCATTTGTGGAAACATGTCAGTAGACAACACAAAGGTCATCCAGATGTCACATGTAGTTTGTGTGCCCGCACATCTGCATCTAAAATTCACCTTAAAAGACATATGATCAAATACCATTCTGACCCAGTAGATCAGCTTATTGACAAGTCAAACAACAGTCATCGTGCTGAGGTAAACGTTACTCACCAGTGTATGAGATGTGACAAAGTTTTTAGGATTAGAAGTTTGTTGAAAAAACATCTTAAATACTGCAAGGGTAAAAGAGATGTAATACCAGTACCTAAAGAAAAAGGCCACTATCCGTGTCCAAAATGTTCTAAAACATTTGAGTATCAGACTTACTTAAACAGACATTTAAGGCACAGTCACCAAGTTCAACACTGCGAGTTATGTTCAGACGATCAAACTGGTCAACATTTTGATGATAAAATGTTATTACTAGATCATATTAGAAAAAAACATGGAAACAATCCCGAATTGTGTTGTGATGTTGATGGTTGTAACAAAGTCATGAGAACAAAAGCTGATTGTCAAAAACATAAACGTGATCATATACGTAAAGTTTTTTCATATGTGTGTGAATTTTGTGGCGATATGCATTCAAATAAAAAAATTTATAGGAAACACTTGCGAACTCGACACAAAGAAAATACTCAGTTTTTATGTGGTGTGTGTATGGAAGTGTGTGTTGACAATGATAGTTTAACAAAACATTTACATGATGCGCACCCACAGACATTCACAAAACCAAACACTTGTCAACTCTGTGGCAAAATGTTCACAGTTGGAAGTAAAGTAGGAGAACACATAGATAAAATGCACGGGAAAAATTTTAAACCTTGCAAAATCTGTTGGAAAGTATTCAACGATATGGATAAACTTAAAGATCACACTGAAAACCATCCAGCTAAAGAAGATACTCCCAAAGTAGCCCCATCTAATAAAAAACCATCTGAGCCAAAACCTAAAACTCCAAAGTTGTATGGTCTTCCTAAAGAACTTGCTGAACTTGGCTTTAGCGAAGAACAACAAGAGAGCTTAAAAAGAGATATAGATGATGTAACTTCTGACATTAACACAAAGAGACTGAGAAAATTACATTCTTGTACAGTTTGTTACAAGAGCTTTAGGTTTGAAATGGATTTGTTTGATCACAAAAGAGAAGAACATTCTATTATTGAAGACATTTTTATTGAAGAAGACACATTACGCAAGATACAACAGTCTGTGTCTATACCAAAAGGTAAAAAAACTGTTTGTAGCATATGCAGAAAAGAATGGGTTAGTTTAAAACATTTTTGGCAACATTTAATTAGAGCCCACCGTGCAGAAGCTGCTTTTGTTTGTGGAATTTGCTGTAAAGTAACTGCAAGTTATAAGGATTTGTCTTTACACTTAGACAACCATCATCCAAATGCTACGGTTATGTCATTATTTTCCTGTGACATTTGTGGTCGCAATCACAATGCATTTTCTAAACTTCAAAAACACCGTATTATTCATTCAAATGCGCCAACTGCATCACCAAAATTTCATTGTGACGAATGTGAACTGGTGTTCAATTCAGAATTGTTTGGAGAAAAACATATTTTGACTCATGGTCCTGGTGGTAAACTTTGTAAAGGTAAAGAACTGTGTCAAGAAATGGATGACGACATGTTGGAAGACCAAATTGAAATGGAAGAGGAAGAAGTAGAAAATATTGTAGAAGTTAAAATAGATAATATAGATGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTAA
- Protein Sequence
- MELNQSRQNNKMSRLHHIQPEVSIFAVSPLSTPKPKKVRSEPPPLKPAIWPARQPVASMQLQQFLKAQRLTSQKLPVQRGPPPLNKMQYFANDSRNEYQKQQQQMHQKLMQQRMAANNNSIREDSPNPMDFLEIAVHAGNSIINNISRDSKQKANSKPARTLSQPDSSSRRKNANPRKVARENETVRPPESSNHFLLSQCEQENLPHSCLLCERNFSNKFDLSQHISGIHGIEPADLHKLNGNLGVDEDLAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSRSLMDHVNIQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIEPDKLIIINNNFHPTKTSNNEHYTISCQVCHKVFPSEDKLLRHMSSVHLMTGCDDMITTTAAVSTVNSPQNSFVNRCELCGESCGSRTEKWWHVLKKHGNDESLICPIPVCRKLFVSQSLRIDHKSHHETQGEFPNTCEICGRLWPSLNDFYKHIMAVHAECMPLICGICLKVHLDVASLREHLKEKHEPLVSKENAVYCDICGRIYTKWSKMMRHRSIHNVEDQVSHFVTDTLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKIHLKRHMIKYHSDPVDQLIDKSNNSHRAEVNVTHQCMRCDKVFRIRSLLKKHLKYCKGKRDVIPVPKEKGHYPCPKCSKTFEYQTYLNRHLRHSHQVQHCELCSDDQTGQHFDDKMLLLDHIRKKHGNNPELCCDVDGCNKVMRTKADCQKHKRDHIRKVFSYVCEFCGDMHSNKKIYRKHLRTRHKENTQFLCGVCMEVCVDNDSLTKHLHDAHPQTFTKPNTCQLCGKMFTVGSKVGEHIDKMHGKNFKPCKICWKVFNDMDKLKDHTENHPAKEDTPKVAPSNKKPSEPKPKTPKLYGLPKELAELGFSEEQQESLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFEMDLFDHKREEHSIIEDIFIEEDTLRKIQQSVSIPKGKKTVCSICRKEWVSLKHFWQHLIRAHRAEAAFVCGICCKVTASYKDLSLHLDNHHPNATVMSLFSCDICGRNHNAFSKLQKHRIIHSNAPTASPKFHCDECELVFNSELFGEKHILTHGPGGKLCKGKELCQEMDDDMLEDQIEMEEEEVENIVEVKIDNIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- -
- 80% Identity
- -