Acrc016893.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01000557.1:38075-49170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0025 0.28 12.5 0.4 2 23 199 221 198 221 0.93 2 23 0.0012 0.14 13.4 0.2 1 23 252 275 252 275 0.95 3 23 0.1 11 7.4 0.5 2 23 282 304 281 304 0.95 4 23 5.6e-05 0.0063 17.6 0.6 2 23 376 398 375 398 0.95 5 23 0.37 42 5.6 0.7 2 23 426 448 426 448 0.94 6 23 0.24 26 6.2 0.6 3 23 456 478 454 478 0.93 7 23 1.1 1.2e+02 4.2 0.1 2 23 487 509 487 509 0.93 8 23 4.2e-05 0.0047 18.0 0.6 2 23 549 570 548 570 0.96 9 23 0.017 1.9 9.8 3.2 1 23 616 639 616 639 0.95 10 23 0.0022 0.24 12.6 1.6 2 23 646 668 645 668 0.96 11 23 0.0085 0.96 10.8 1.6 1 21 691 711 691 712 0.91 12 23 1.2e-05 0.0013 19.8 4.0 1 23 729 752 729 752 0.96 13 23 1.3 1.4e+02 3.9 0.4 3 23 757 783 756 783 0.81 14 23 9.7 1.1e+03 1.1 3.0 3 23 791 813 789 813 0.91 15 23 1.3 1.4e+02 3.9 4.0 1 23 820 843 820 843 0.96 16 23 0.89 1e+02 4.4 0.4 1 23 849 872 849 872 0.91 17 23 0.1 12 7.3 0.1 3 23 882 903 881 903 0.83 18 23 9.4e-05 0.011 16.9 0.2 2 23 909 930 908 930 0.96 19 23 0.0073 0.82 11.0 3.1 1 23 996 1019 996 1019 0.95 20 23 0.62 69 4.9 0.4 2 23 1047 1069 1046 1069 0.95 21 23 0.13 14 7.0 0.4 1 23 1075 1098 1075 1098 0.97 22 23 0.48 54 5.2 1.1 1 23 1107 1129 1107 1129 0.95 23 23 0.0077 0.87 10.9 1.5 1 23 1139 1161 1139 1161 0.97
Sequence Information
- Coding Sequence
- atgtcacgATTACATCACATTCAACCAgaagtATCAATTTTTGCTGTTTCTCCAAATCCTCCACCCAAaccaagaaaaattaaaagtgaacCTCCTCCTTTAAAACCAGCAATATGGCCTTCAAAGCAACCTCCAGCGTCTATGCAATTACAACAATTCTTAAAAGCTCAGCGCCTGAGTCAAAAGCAACTTGTTCAAAGAGGGCCCCCGCCACTTaacaaaatgcaatattttgcTAATGATAGCCGAACAGAGTATCAAAAACAACAACAGGCAATGCACCAAAAAATGATGCAGCAACGTGCCATAATCAATAGCCatactaacaataatagtatacggGAAGATTCTCCAAACCCAATGGATTTTTTAGAGATTGGAGTTCATGCTGGTAGCTGTATTAATCTTATTGATATTCCAAGGGATAAACCGAGATCCAATTTAAAATCGggaGGAAATATATCTCAATCGGATTCTGGTAGTCGTCGCAAGAATGCTAATCCAAGAAAAGTAGCTCGAGAAAATGAAATTGAACCACCAGGACCAAGTGATCATTTTCTGCTTTCTCAAATTAAACAAGAAAACCTTCGTCAATCCTGCTTGTTATGTGAGcgaaattttagtaataaaaatgatctaaGTCAACATATATCTGAAGTGCATGGTATTGAACCTTCAGATTTACATAAACTAAATGGACATTTGGGTGAAGATGAAGAGCTTGCTGAAAGTATGATGGAAGCtgaaactgtatttttttgtgaagTATGTACTAGAGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTTAGAGGTCACAAACAGGAAGCTGCAGTGACATGTGGAGTGTGCATGAAAATCTGTAGTGATAGTAAATCTTTAATGGAGCATGTAAATATCCAACATCCTAAAAATTGTGATACGGCCGATTCCGTACAACGTAGGTATAGATGCCAAGTTTGTGCACGACAACATGATaccaagaaaaaaatgatgagaCATGTGGTTATCCACACAGTATACGATAATGATGGTCAAATTATCGATcctgataaattaattataattaacaataattttcatcCAACTAAATCTTCAAATAATGAACATTACACAATTAGTTGTCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCTGTTCATCTGATGACTGGTTGTGATGATATGATTACCACAACAGCTGTTACAACTACTGGTAATTCTTCTCAAAGTAGTTTTGTGAATCGCTGTGAATTATGTGGTGAATCATGTGGTTCACGTACTGAAAAATGGTGGCATGTGCTTAAAGAGCACGGTACTAATGAAACACTTATATGTCCAAAACCGGACtgtagaaaattatttgtttcacaATCTTTACAAATTGAACATCAATCTCACCACGAAACCCAAGGTGAACTTCCTAATACCTGTGAAGTATGTGGACGGTTATGGCCTAATAGAAATGATTTTTACAAACACATAATGGCTGTACATGCTGAATGTATGCCTTTATTATGTGgtatatgtttaaaagttCATATAGATGTACCAAAACTCAGAGAACATATAAAAGAGAAACACGAACCTTTAGTATCCAAGGAAAATGCTATTTATTGTGATATATGTGGTCGCACATACACTAAATGGTCAAAAATGATGAGGCATAGATCAATTCATAATGTTGAAGATCAGGTATCTCACTTTGTAACAGATCAATTAACTGAAGTAAATCTAAAGTGTACATTATGTCCCGATActgaatttaaaactgttgaaGAAATATCTGAACACAGAAAGAATGACCATCAACTGCATGTATGTGATCTTTGTTCAAAATACTATAGTGGCAACAATCATTTATGGAAGCATGTTAGTAGACAACATAAAGGTCATCCAGATGTCACATGTAGCTTATGTGCACGTACATCTGCTTCTAAAGTTCATCTTAAAAGGCATATGATCAAATATCATTCTGATCCTGTAGATCAGCTTATAGACAAgtcaaataatagtatttgtgCAGAATTAAATGCCATTCATCAATGTATAAGATGTGATAAAGTGTTTAGAATTAGAAGTTTACTAAAGAAACATCTTAAATACTGTAAAGGTAAAAGAGATGTAATGCCAATACCCAAAGAAAAAGGTCATTATCCTTGTACAAAATGTGGTAAAACGTTTGAATACCAAACTTACTTAAatagacatttaaaacatAGCCATCTAGTTCAGTATTGTGAGATATGTTCTGAAGATAAAACTGGTgaacattttgataataaaatgttattgatgGATCATATCAGAGAAAAACATGGAAACGATCCTGAATTGTGTTGTGATGTTGAAGGTTGTGACAAAGTTATGAGAACTAAAGTTGATTGCCAGAAGCATAAACGTGATCATGTTCGTAAAGTATTTTCATATGTTTGTGAATTTTGTGGAGATATGcactcaaataaaaaaacctatagAAAACACTTGAGACAGCGGCACAAAGGAAATACACAGTATTTATGTGGTGTGTGTATGGAAGTCTGTGTAGACAATGATGGATTATCAAAACACTTACATGAAGCACATCCTCAGACATTTtccaaatcaaatatttgcCAGATTTGtgggaaaatgtttactcttGGAAGTAAAGTTGGAGAACACATAGATAAAATTCacggaaaaaatttaaaaccttgCAAAATTTGTTGGAAAGTATTTAGCGATATGGATAAACTTAAAGATCACATTGAAAATCATCCAGCAAAAGAGGAATTCCCCAAAGTAGTTACTCCTGTGAAAAAGCCAATTGAACCAAAACCAAAAACTCCCAAGCTATATGGTCTTCCTAAAGAACTTGCTGAGCTGGGTTTCAATGAAGAGCAACAGGAAAGTTTAAAACGAGATATAGACGATGTTACTTCAGATATAAACACAAAGAGACTGAGAAAATTACATTCGTGTACAGTTTGCTACAAAAGTTTTAGATTTGAAACAGATTTATATGATCACAAACGAGAAGAGCATTCGATTATTGAAGATAGTTATATGGAAGAAGAAACTGAGCGCAAGGAACAACAGTCATCTATaccaaaaagtaataaaactgTGTGTGGTATATGCAAAAAAGAATGGATtagtttgaaacatttttggcAACATTTAATTAGAGCTCATCGCACAGAAGCTGCATTTGTATGTGGTATTTGCTGtaaaataactaagaattatgATGAGTTAGCTTTACACTTAGATACTATCCATCCAAATGCCACAGTTTTGTCATTATTTGCTTGTGATGTTTGTGGGCGTAATCACAATGCATTTTCAAAACTCCAAAAACATCGTATTATACATTCGACTGCACCACCTGCGTTCCCAAAATTCCATTGTGATGAGTGTGAACtggtttttaattctaaatcatatggacaaaaacatattttgagcCATGGACCTGGTAGTAAATTATGCAAAGGTAAAGATTTGTGTCAAGAAATGGATGATGACATGTTGGATGAACAAATTGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGAAGATGGCATAGATGTTAAAATAGAAGATAGTGCAGATtctgttaaaattgaatatggcGCAGATGTTAAAATGGAAAATGAAGGAGATGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGATGTTGAACAAAACGATGACGATGGAGATGaagataatgataatgaacAACTTGATGAAGTAGAAGATGAAGAAGACATAGAACAGAATGCAGAAGAagaagacgacgacgacgatgaacAAAATGACGAAGCTGATGCTGAGGAAGATAAGGAACAGATTGGAGCAGATGATGACGAAGATGTTGAGGAAAATGGTGTTGATGATCAAGATGACGATGAAGATGAAGAACAAGAAGAGGAAGAAGATGACGATGATGAAGTCTAA
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPSKQPPASMQLQQFLKAQRLSQKQLVQRGPPPLNKMQYFANDSRTEYQKQQQAMHQKMMQQRAIINSHTNNNSIREDSPNPMDFLEIGVHAGSCINLIDIPRDKPRSNLKSGGNISQSDSGSRRKNANPRKVARENEIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKNDLSQHISEVHGIEPSDLHKLNGHLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNIQHPKNCDTADSVQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKSSNNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTAVTTTGNSSQSSFVNRCELCGESCGSRTEKWWHVLKEHGTNETLICPKPDCRKLFVSQSLQIEHQSHHETQGELPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHIDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSICAELNAIHQCIRCDKVFRIRSLLKKHLKYCKGKRDVMPIPKEKGHYPCTKCGKTFEYQTYLNRHLKHSHLVQYCEICSEDKTGEHFDNKMLLMDHIREKHGNDPELCCDVEGCDKVMRTKVDCQKHKRDHVRKVFSYVCEFCGDMHSNKKTYRKHLRQRHKGNTQYLCGVCMEVCVDNDGLSKHLHEAHPQTFSKSNICQICGKMFTLGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEEFPKVVTPVKKPIEPKPKTPKLYGLPKELAELGFNEEQQESLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEETERKEQQSSIPKSNKTVCGICKKEWISLKHFWQHLIRAHRTEAAFVCGICCKITKNYDELALHLDTIHPNATVLSLFACDVCGRNHNAFSKLQKHRIIHSTAPPAFPKFHCDECELVFNSKSYGQKHILSHGPGSKLCKGKDLCQEMDDDMLDEQIEEEEEEEEEEEEEEVEDGIDVKIEDSADSVKIEYGADVKMENEGDEEEEEEEEEEDVEQNDDDGDEDNDNEQLDEVEDEEDIEQNAEEEDDDDDEQNDEADAEEDKEQIGADDDEDVEENGVDDQDDDEDEEQEEEEDDDDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_00135639;
- 80% Identity
- -