Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:1123733-1134551[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0021 0.18 12.4 0.4 2 23 210 232 209 232 0.93

2 24 0.001 0.089 13.4 0.2 1 23 263 286 263 286 0.95

3 24 0.087 7.4 7.4 0.5 2 23 293 315 292 315 0.95

4 24 9.4 8e+02 1.0 1.8 1 23 329 351 329 351 0.93

5 24 4.8e-05 0.0041 17.6 0.6 2 23 387 409 386 409 0.95

6 24 0.32 27 5.6 0.7 2 23 437 459 437 459 0.94

7 24 0.2 17 6.2 0.6 3 23 467 489 465 489 0.93

8 24 0.9 77 4.2 0.1 2 23 498 520 498 520 0.93

9 24 3.6e-05 0.0031 18.0 0.6 2 23 560 581 559 581 0.96

10 24 0.015 1.3 9.8 3.2 1 23 627 650 627 650 0.95

11 24 0.0019 0.16 12.6 1.6 2 23 657 679 656 679 0.96

12 24 0.0073 0.62 10.7 1.6 1 21 702 722 702 723 0.91

13 24 9.9e-06 0.00084 19.8 4.0 1 23 740 763 740 763 0.96

14 24 1.1 92 3.9 0.4 3 23 768 794 767 794 0.81

15 24 8.4 7.1e+02 1.1 3.0 3 23 802 824 800 824 0.91

16 24 1.1 92 3.9 4.0 1 23 831 854 831 854 0.96

17 24 0.76 65 4.4 0.4 1 23 860 883 860 883 0.91

18 24 0.089 7.6 7.3 0.1 3 23 893 914 892 914 0.83

19 24 8.1e-05 0.0069 16.9 0.2 2 23 920 941 919 941 0.96

20 24 0.0063 0.54 10.9 3.1 1 23 1007 1030 1007 1030 0.95

21 24 0.53 45 4.9 0.4 2 23 1058 1080 1057 1080 0.95

22 24 0.11 9.3 7.0 0.4 1 23 1086 1109 1086 1109 0.97

23 24 0.41 35 5.2 1.1 1 23 1118 1140 1118 1140 0.95

24 24 0.0066 0.56 10.9 1.5 1 23 1150 1172 1150 1172 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0021	0.18	12.4	0.4	2	23	210	232	209	232	0.93
2	24	0.001	0.089	13.4	0.2	1	23	263	286	263	286	0.95
3	24	0.087	7.4	7.4	0.5	2	23	293	315	292	315	0.95
4	24	9.4	8e+02	1.0	1.8	1	23	329	351	329	351	0.93
5	24	4.8e-05	0.0041	17.6	0.6	2	23	387	409	386	409	0.95
6	24	0.32	27	5.6	0.7	2	23	437	459	437	459	0.94
7	24	0.2	17	6.2	0.6	3	23	467	489	465	489	0.93
8	24	0.9	77	4.2	0.1	2	23	498	520	498	520	0.93
9	24	3.6e-05	0.0031	18.0	0.6	2	23	560	581	559	581	0.96
10	24	0.015	1.3	9.8	3.2	1	23	627	650	627	650	0.95
11	24	0.0019	0.16	12.6	1.6	2	23	657	679	656	679	0.96
12	24	0.0073	0.62	10.7	1.6	1	21	702	722	702	723	0.91
13	24	9.9e-06	0.00084	19.8	4.0	1	23	740	763	740	763	0.96
14	24	1.1	92	3.9	0.4	3	23	768	794	767	794	0.81
15	24	8.4	7.1e+02	1.1	3.0	3	23	802	824	800	824	0.91
16	24	1.1	92	3.9	4.0	1	23	831	854	831	854	0.96
17	24	0.76	65	4.4	0.4	1	23	860	883	860	883	0.91
18	24	0.089	7.6	7.3	0.1	3	23	893	914	892	914	0.83
19	24	8.1e-05	0.0069	16.9	0.2	2	23	920	941	919	941	0.96
20	24	0.0063	0.54	10.9	3.1	1	23	1007	1030	1007	1030	0.95
21	24	0.53	45	4.9	0.4	2	23	1058	1080	1057	1080	0.95
22	24	0.11	9.3	7.0	0.4	1	23	1086	1109	1086	1109	0.97
23	24	0.41	35	5.2	1.1	1	23	1118	1140	1118	1140	0.95
24	24	0.0066	0.56	10.9	1.5	1	23	1150	1172	1150	1172	0.97

Sequence Information

Coding Sequence: ATGGAATCCAATCGATCTATACAAAATAATAAAATGTCACGATTACATCACATTCAACCAGAAGTATCAATTTTTGCTGTTTCTCCGAATCCTCCACCCAAACCAAGGAAAATTAAAAGTGAACCTCCTCCTTTAAAACCAGCAATATGGCCTTCAAAGCAACCTCCAGCGTCTATGCAATTACAACAATTTTTAAAAGCTCAGCGTTTGAGTCAAAAGCAACTTGTTCAAAGAGGGCCCCCGCCACTTAACAAAATGCAATATTTTGCTAATGATAGCCGAACAGAGTATCAAAAACAACAACAGGCAATGCATCAAAAAATGATGCAGCAACGTGCCATAATCAATAGCCATACTAACAATAACAGTATACGGGAAGATTCTCCAAACCCAATGGATTTTCTAGAGATTGGAGTTCATGCTGGTAGCTGTATTAATCTTATTGATATTCCAAGGGATAAACCGAGATCCAACTTAAAATCGGGAGGAAATATATCTCAATCAGATTCTGGTAGTCGTCGCAAAAATGCTAATCCAAGAAAAGTAGCTCGAGAAAATGAAATTGAACCACCAGGACCAAGTGATCATTTTCTGCTTTCTCAAATTAAACAAGAAAACCTTCGTCAATCCTGCTTGTTATGTGAGCGAAATTTTAGTAATAAAAATGATCTAAGTCAACATATATCTGAAGTACATGGTATTGAACCTTCAGATTTACATAAACTAAATGGACATTTGGGTGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACTGTATTTTTTTGTGAAGTATGTACTAGAGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTTAGAGGTCACAAACAGGAAGCTGCAGTGACATGTGGAGTGTGCATGAAAATCTGTAGTGATAGTAAATCTTTAATGGAGCATGTAAATATCCAACATCCTAAAAATTGTGATACGGCTGATTCCGTACAACGTAGGTATAGATGTCAAGTTTGTGCACGACAACATGATACCAAGAAAAAAATGATGAGACATGTGGTTATCCACACAGTATACGATAATGATGGTCAAATTATCGATCCTGATAAATTAATTATAATTAACAATAATTTTCATCCAACTAAATCTTCAAATAATGAACATTACACAATTAGTTGTCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCTGTTCATCTGATGACTGGTTGTGATGATATGATTACAACAACAGCTGTTACAACCACTGGTAATTCTTCTCAAAGTAGTTTTGTGAATCGCTGTGAATTATGTGGTGAATCATGTGGTTCACGTACTGAAAAATGGTGGCATGTGCTTAAAGAGCACGGTACTAATGAATCACTTATATGTCCAAAACCAGACTGTAGAAAATTATTTGTTTCACAATCTTTACAAATTGAACATCAATCTCACCACGAAACCCAAGGTGAACTTCCTAATACCTGTGAAGTATGTGGACGGTTATGGCCTAACAGAAATGATTTTTACAAACACATCATGGCTGTACATGCTGAATGTATGCCTTTATTATGTGGTATATGTTTAAAAGTTCATGTAGATGTACCAAAACTCAGAGAACATATAAAAGAAAAACATGAACCTTTAGTATCCAAGGAAAATGCTATTTATTGTGATATATGTGGTCGCACATACACTAAATGGTCAAAAATGATGAGGCATAGATCAATTCATAATGTTGAAGATCAGGTATCTCACTTTGTAACAGATCAATTAACTGAAGTAAATCTAAAGTGTACATTATGTCCTGATACTGAATTTAAAACTGTTGAAGAAATATCTGAACACAGAAAGAATGACCATCAACTGCATGTATGTGATCTTTGTTCAAAATACTATAGTGGCAACAATCATTTATGGAAGCATGTCAGTAGACAACATAAAGGTCATCCAGATGTCACATGTAGCTTATGTGCACGAACATCTGCTTCTAAAGTTCACCTTAAAAGGCATATGATCAAATATCATTCTGATCCTGTAGATCAGCTTATAGACAAGTCAAATAATAGTATTTGTGCAGAATTAAATGCCATTCATCAATGTATAAGATGTGATAAAGTGTTTAGAATTAGAAGTTTACTAAAGAAACATCTTAAGTACTGTAAAGGTAAAAGAGATGTAATGCCAATACCCAAAGAAAAAGGTCATTATCCTTGTACAAAATGTGGTAAAACATTTGAATACCAAACTTACTTAAATAGACATTTAAAGCATAGCCACTTAGTTCAGTATTGTGAGATATGTTCTGAAGATAAAACTGGTGAACATTTTGATAATAAAATGTTATTAATGGATCATATCAGAGAAAAACATGGAAACGATCCTGAGTTGTGTTGTGATGTTGAAGGTTGTGACAAAGTTATGAGAACTAAAGTTGATTGCCAGAAGCATAAACGTGATCATGTTCGTAAAGTATTTTCATATGTTTGTGAATTTTGTGGAGATATGCACTCAAATAAAAAAACCTATAGAAAACACTTAAGACAGCGGCACAAAGGTAATACACAGTATTTATGTGGTGTGTGTATGGAAGTATGTGTAGACAATGATGGATTATCAAAACACTTACATGAAGCACATCCTCAGACATTTTCCAAGTCAAATATTTGCCAGATTTGTGGCAAAATGTTTACTCTTGGAAGTAAAGTTGGAGAACACATAGATAAAATTCATGGAAAAAATTTAAAACCTTGCAAAATTTGTTGGAAAGTATTTAGTGATATGGATAAACTTAAAGATCACATTGAAAATCATCCAGCAAAAGAGGAATTCCCCAAAGTAGTTACTCCAGTGAAAAAGCCAATTGAACCAAAACCAAAAACTCCCAAGCTATATGGTCTTCCTAAAGAACTTGCTGAGCTGGGTTTCAATGAAGAGCAACAGGAAAGTTTGAAACGAGATATAGACGACGTTACTTCAGATATAAACACAAAGAGACTGAGAAAATTACATTCGTGTACAGTTTGCTACAAAAGTTTTAGATTTGAAACAGATTTATATGATCACAAACGAGAAGAGCATTCGATTATTGAAGATAGTTATATGGAAGAAGAAACTGAGCGCAAAGAACAACAGTCATCTATACCAAAAAGTAATAAAACTGTGTGTGGTATATGTAAAAAAGAATGGATTAGTTTGAAACATTTTTGGCAACATTTAATTAGAGCTCACCGCACAGAAGCTGCATTTGTTTGTGGTATTTGCTGTAAAATAACTAAGAATTATGACGAGTTAGCTTTACACTTAGATACTGTTCATCCAAATGCCACAGTTTTGTCATTATTTGCTTGTGATGTTTGTGGTCGTAATCACAATGCATTTTCAAAACTCCAAAAACATCGTATTATACATTCGACTGCACCACCTGCGTTCCCAAAATTCCATTGTGATGAATGTGAACTGGTTTTTAATTCTAAATCATATGGACAGAAACATATTTTGAGCCATGGACCTGGTAGTAAATTATGCAAAGGTAAAGATTTATGTCAAGAAATGGATGATGACATGTTGGATGAACAAATTGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGAAGATGACGTAGATGTTAAAGTAGAAGATAGTGCAGATGCTGTTAAAGATGAATATGGCACAGATGTTAAAATAGAAAATGAAGGAGATGAAGAAGAGGAAGAGGAAGAGGAGGAGGAAGATGTTGAACAAAACGATGACGATGGAGATGAAGATAATGATAATGAACAACTTGATGAAGTAGAAGATGAAGAAGACGTAGAACAGAATGCAGAAGAAGAAGACGACGACGACGATGAACAAAATGACGATGCTGATGCTGAGGAAGATAAGGAACAGATTGAAGCAGATGATGACGATGAAGATGTTGAGGAAAATGGTGTTGATGATCAAGATGACGATGAAGAGGAAGAAGATGACGATGATGAAGTCTAA
Protein Sequence: MESNRSIQNNKMSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPSKQPPASMQLQQFLKAQRLSQKQLVQRGPPPLNKMQYFANDSRTEYQKQQQAMHQKMMQQRAIINSHTNNNSIREDSPNPMDFLEIGVHAGSCINLIDIPRDKPRSNLKSGGNISQSDSGSRRKNANPRKVARENEIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKNDLSQHISEVHGIEPSDLHKLNGHLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNIQHPKNCDTADSVQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKSSNNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTAVTTTGNSSQSSFVNRCELCGESCGSRTEKWWHVLKEHGTNESLICPKPDCRKLFVSQSLQIEHQSHHETQGELPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHVDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSICAELNAIHQCIRCDKVFRIRSLLKKHLKYCKGKRDVMPIPKEKGHYPCTKCGKTFEYQTYLNRHLKHSHLVQYCEICSEDKTGEHFDNKMLLMDHIREKHGNDPELCCDVEGCDKVMRTKVDCQKHKRDHVRKVFSYVCEFCGDMHSNKKTYRKHLRQRHKGNTQYLCGVCMEVCVDNDGLSKHLHEAHPQTFSKSNICQICGKMFTLGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEEFPKVVTPVKKPIEPKPKTPKLYGLPKELAELGFNEEQQESLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEETERKEQQSSIPKSNKTVCGICKKEWISLKHFWQHLIRAHRTEAAFVCGICCKITKNYDELALHLDTVHPNATVLSLFACDVCGRNHNAFSKLQKHRIIHSTAPPAFPKFHCDECELVFNSKSYGQKHILSHGPGSKLCKGKDLCQEMDDDMLDEQIEEEEEEEEEEEEEEEEVEDDVDVKVEDSADAVKDEYGTDVKIENEGDEEEEEEEEEEDVEQNDDDGDEDNDNEQLDEVEDEEDVEQNAEEEDDDDDEQNDDADAEEDKEQIEADDDDEDVEENGVDDQDDDEEEEDDDDEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340860;
90% Identity: iTF_00134791; iTF_00136349; iTF_01033253; iTF_01305897; iTF_00184810; iTF_00942154; iTF_01305067; iTF_00973260; iTF_01304398; iTF_01167954; iTF_00463572; iTF_00019675; iTF_01038696; iTF_01032405; iTF_01329244;
80% Identity: -