Asol017542.1
Basic Information
- Insect
- Aulacorthum solani
- Gene Symbol
- -
- Assembly
- GCA_008528875.1
- Location
- PVMI01011909.1:5582-9908[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0036 0.7 11.5 0.3 2 23 199 221 198 221 0.93 2 24 0.00084 0.17 13.4 0.2 1 23 252 275 252 275 0.95 3 24 0.07 14 7.4 0.5 2 23 282 304 281 304 0.95 4 24 7.6 1.5e+03 1.0 1.8 1 23 318 340 318 340 0.93 5 24 3.9e-05 0.0076 17.6 0.6 2 23 375 397 374 397 0.95 6 24 9.3 1.8e+03 0.7 0.7 2 23 425 447 425 447 0.92 7 24 0.16 32 6.2 0.6 3 23 455 477 453 477 0.93 8 24 0.73 1.4e+02 4.2 0.1 2 23 486 508 486 508 0.93 9 24 2.9e-05 0.0057 18.0 0.6 2 23 548 569 547 569 0.96 10 24 0.012 2.4 9.8 3.2 1 23 615 638 615 638 0.95 11 24 0.0015 0.3 12.6 1.6 2 23 645 667 644 667 0.96 12 24 0.0059 1.2 10.8 1.6 1 21 690 710 690 711 0.91 13 24 7.9e-06 0.0016 19.8 4.0 1 23 728 751 728 751 0.96 14 24 1.6 3.1e+02 3.1 0.4 3 23 756 782 755 782 0.80 15 24 6.7 1.3e+03 1.1 3.0 3 23 790 812 788 812 0.91 16 24 0.87 1.7e+02 3.9 4.0 1 23 819 842 819 842 0.96 17 24 0.62 1.2e+02 4.4 0.4 1 23 848 871 848 871 0.91 18 24 0.072 14 7.4 0.1 3 23 881 902 880 902 0.83 19 24 6.5e-05 0.013 16.9 0.2 2 23 908 929 907 929 0.96 20 24 0.0051 1 11.0 3.1 1 23 995 1018 995 1018 0.95 21 24 0.43 84 4.9 0.4 2 23 1046 1068 1045 1068 0.95 22 24 0.33 64 5.3 1.7 1 23 1074 1096 1074 1097 0.94 23 24 0.33 65 5.3 1.1 1 23 1106 1128 1106 1128 0.95 24 24 0.0065 1.3 10.6 1.1 1 23 1138 1160 1138 1160 0.97
Sequence Information
- Coding Sequence
- atgtcacgATTACATCACATTCAACCAGaaGTATCAATTTTTGCTGTTTCTCCAAATCCTCCTCCTCCTAAACCAAGGAAAATTAAAACCGAACCTCCTCCTTTAAAACCAGCAATATGGCCTTCCAAGCAACCAGCCGCATCTATGCAATTACAACAATTCTTAAAAGCTCAGCGTCTGAGTCAAAAACAACTAGTTCAAAGAGGGCCCCCGCCACTTaacaaaatgcaatattttgcTAATGATAGCCGTACAGAGtatcaaaaacaacaacagGCAATGCATCAAAAAATGATGCAGCAACGTGCCATAATAAATAGCCAtaccaacaataatagtatacggGAAGATTCTCCAAACCCCATGGATTTTTTAGAGattggAGTTCATGCTGGTAACTgtatcatcaataatattccAAGGGATAAACCAAGATCCAATTTGAAATCGggAGGAAATTTATCACAATCAGATTCCGGTAGTCGCCGTAAAAATGCTAATCCAAGAAAAGTAGCTCGAGAAAATGAAATTGAACCACCGGGACCAAGTGATCATTTTCTGCTTTCTCAGATTAAACAAGAAAACCTTCGTCAATCCTGTTTATTATGTGAACgaaattttagtaataaaattgatcTAAGTCAACATATATCTGAAGTGCATGGTATTGAACCTTcagatttacataaattaaatggaCATTTGGGAGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCTGAAACTGTGTTTTTTTGTGAAGTATGTACTAGAGAATTTCAAGACAAAGCTAGTCTTTGGTTACATATGGTCAGAGGTCACAAACAGGAAGCTGCAGTGACATGTGGAGTGTGTATGAAAATCTGCAGTGATAGTAAATCACTAATGGAACATGTAAATATCCAACATCCCAAAAATTGTGATACTGCCGATTCCGTACAACGTAGGTATAGATGTCAGGTATGTGCACGGCAACATGAtaccaagaaaaaaatgatgagaCACGTGGTCATCCACACAGTGTACGATAATGATGGTCAAATTATCGATcctgataaattaataataatcaataataattttcatcctACTAAGTCATCAAACGAGCATTACACAATTAGCTGTCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCTGTTCATCTAATGACTGGTTGTGATGATATGATTACTACAACAGCCTTAACAACCACTGGTAATTCTTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGTGATTCATGTGGTTCTCGTACTGAAAAATGGTGGCATGTGCTTAAAGAGCACGGCACTAATGAAACACTAATATGCCCAAAACCTGACtgtagaaaattatttgtgtcACAATCTTTACAAATAGAACATCAATCTCATCATGAAACCCAAGGTGAACTTCCGAATACCTGTGAAGTATGTGGGCGGTTATGGCCTAATCGAAATGActtttataaacacataatgGCTGTACACGCTGAATGTATGCCTTTATTATGTGGTATATGTTTAAAAGTTCACGTGGATGTACCAAAACTTAGAGAACATATAAAAGAGAAACACGAGCCCTTAGTATCTAAAGAGAATGCTATTTATTGCGATATATGTGGTCGTACTTACACCAAATGGTCAAAAATGATGAGGCATAGATCAATTCACAATGTTGAAGATCAGGTATCTCATTTTGTAACAGATCAATTAACCGAAGTGAATCTTAAGTGTACATTGTGTCCTGACActgaatttaaaactgttgaaGAAATATCTgaacatagaaaaaatgaCCATCAACTGCATGTATGTGATCTCTGTTCAAAATACTATAGTGGCAATAATCATTTATGGAAACATGTTAGTAGACAACACAAAGGTCATCCAGATGTTACTTGTAGCTTATGTGCACGCACATCTGCATCTAAAGTTCACCTCAAAAgacatatgataaaatatcattctgATCCCGTGGATCAGCTTATAGACAAgtcaaataatagtatttgcGCAGAGTTAAATGCTATTCACCAATGTATAAGATGTGATAAAGTGTTTAGGATTAGAAGTTTACTGAAGAAACATCTTAAATACTGCAAAGGTAAAAGGGATGCAATGCCAATACCCAAAGAAAAAGGTCATTATCCTTGTACAAAATGTggtaaaacatttgaatatcaGACTTACTTAAATAGACATTTAAAGCATAGCCACTTAGTTCAGTATTGTGAGATATGTTCTGAAGATAAAACTGGTGAACACTTTGATAGTAAAATGTTGCTAATGGATCATATCAGAGACAAACATGGAAATGATCCAGAGTTGTGTTGTGATGTTGAAGGTTGTGACAAAGTTATGAGAACTAAAGTCGATTGTCAGAAACATAAGCGTGATCATGTCCGTAAAGTGTTTTCATATGTTTGTGAATTTTGTGGAGATATGCACTCAAATAAGAAAACCTATAGAAAACACTTAAGGCAGCGTCACAAAGGAAACACTCAGTATTTATGTGGTGTGTGTATGGAAGTATGTGTTGACAATGATGgtttatcaaaacatttacatGAAGCGCACCCTCAGACATTTTCCAAGTCGAATATTTGCCAGATATGTGGGAAAATGTTTACTCTTGGAAGTAAAGTTGGAGAACACATAGATAAAATTCatggaaaaaatttaaaaccttgCAAAATCTGTTGGAAAGTATTCAGCGATATGGATAAACTTAAGGATCACATTGAAAATCATCCAGCAAAAGAGGAATTCCCCAAAGTAGTTACCCCTGTGAAAAAGCCAATAGAACCAAAACCAAAAACTCCCAAGTTATATGGTCTTCCTAAAGAACTTGCTGAGCTCGGTTTCAATGAAGAGCAACAGGAGAGTTTGAAACGAGATATTGATGATGTTACTTCAGACATAAACACAAAGAGACTGAGAAAATTACATTCTTGTACAGTTTGCTACAAAAGCTTTAGGTTTGAAACAGATCTATATGATCACAAACGAGAAGAGCATTCAATTATTGAAGACAGTTATATGGAAGAAGAAATTGAGCGCAAGGAACAACCGCCATCTGCTCCCAAAAGTAATAAAACTGTGTGTGGTATATGCAAAAAAGAATGGATaagtttgaaacatttttggcAACACTTAATAAGAGCTCATCGCACAGAAGCTGCATTTGTTTGTGgtatttgttgtaaaataactaAGAATTATGATGAGCTAGCTTTACATTTAGATAATCACCATCCGAATGCCACAGTTTTGTCATTATTTGCTTGTGATGTTTGTGGTCGCAATCACAATGCATTTTCTAAGCTCCAAAAACATCGTATTATACATTCGACTGCACCACCTGCGTTCCCGAAGTTCCATTGCGATGAGTGTGAACTGGTGTTTAATTCAAAGTCATATGGggagaaacatattttaagtcatGGACCAGGTAGTAAATTATGCAAAGGTAAAGATTTATGTCAAGAAATGGATGAAGACATGCTGGATGACCAAATTGAAgaggaagaagaagaagaagaagaagaggaggaggaggaggaggtaGAAGATGGCGGAGATGCTGAAACAGAAAATAAAGGAGATGATGATGAAGATGAGGAGGATGAGGAGGAAGATGTCGAACAAATCGATGACGATGGAGATGATGATAATGAACAAAATGATGATGTTGAAGATGATGTAGAAGATGAAGAAGACGTGGAACAGAATGCTGAAGACGAAGAAgacgatgacgatgatgaACAAAACGACGATGTTGATGCCGAGGAAGATAAAGAGCAGGTTGAAGCAGATGATGACGAAGAAGAAGATGTAGAGGAAAATGGTGTGGATGATCAGGATGATGATGAGGATGAAGAACAAGAAGAGGAAgaagatgatgatgatgaagtCTAA
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPPPKPRKIKTEPPPLKPAIWPSKQPAASMQLQQFLKAQRLSQKQLVQRGPPPLNKMQYFANDSRTEYQKQQQAMHQKMMQQRAIINSHTNNNSIREDSPNPMDFLEIGVHAGNCIINNIPRDKPRSNLKSGGNLSQSDSGSRRKNANPRKVARENEIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKIDLSQHISEVHGIEPSDLHKLNGHLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNIQHPKNCDTADSVQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKSSNEHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTALTTTGNSSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNETLICPKPDCRKLFVSQSLQIEHQSHHETQGELPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHVDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSICAELNAIHQCIRCDKVFRIRSLLKKHLKYCKGKRDAMPIPKEKGHYPCTKCGKTFEYQTYLNRHLKHSHLVQYCEICSEDKTGEHFDSKMLLMDHIRDKHGNDPELCCDVEGCDKVMRTKVDCQKHKRDHVRKVFSYVCEFCGDMHSNKKTYRKHLRQRHKGNTQYLCGVCMEVCVDNDGLSKHLHEAHPQTFSKSNICQICGKMFTLGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEEFPKVVTPVKKPIEPKPKTPKLYGLPKELAELGFNEEQQESLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEEIERKEQPPSAPKSNKTVCGICKKEWISLKHFWQHLIRAHRTEAAFVCGICCKITKNYDELALHLDNHHPNATVLSLFACDVCGRNHNAFSKLQKHRIIHSTAPPAFPKFHCDECELVFNSKSYGEKHILSHGPGSKLCKGKDLCQEMDEDMLDDQIEEEEEEEEEEEEEEEVEDGGDAETENKGDDDEDEEDEEEDVEQIDDDGDDDNEQNDDVEDDVEDEEDVEQNAEDEEDDDDDEQNDDVDAEEDKEQVEADDDEEEDVEENGVDDQDDDEDEEQEEEEDDDDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_00135639;
- 80% Identity
- -