Ttri011011.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050406.1:40897288-40903239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0038 0.56 12.1 0.5 2 23 198 220 197 220 0.93 2 23 0.0014 0.21 13.4 0.2 1 23 251 274 251 274 0.95 3 23 0.057 8.4 8.4 0.8 2 23 281 303 280 303 0.96 4 23 6.5e-05 0.0096 17.6 0.6 2 23 375 397 374 397 0.95 5 23 0.056 8.3 8.4 0.9 2 23 424 446 424 446 0.95 6 23 0.3 45 6.1 0.3 3 23 454 476 452 476 0.92 7 23 1.2 1.8e+02 4.2 0.1 2 23 485 507 485 507 0.93 8 23 4.9e-05 0.0072 18.0 0.6 2 23 547 568 546 568 0.96 9 23 0.02 3 9.8 3.2 1 23 614 637 614 637 0.95 10 23 0.0025 0.37 12.6 1.6 2 23 644 666 643 666 0.96 11 23 0.00072 0.11 14.3 3.6 1 21 689 709 689 710 0.95 12 23 0.00024 0.035 15.9 5.3 1 23 728 751 728 751 0.97 13 23 9.1 1.3e+03 1.4 1.0 3 23 756 781 755 781 0.82 14 23 0.98 1.5e+02 4.5 3.2 3 23 789 811 787 811 0.92 15 23 0.43 64 5.6 4.1 1 23 819 842 819 842 0.96 16 23 1 1.5e+02 4.4 0.5 1 23 848 871 848 871 0.91 17 23 0.65 96 5.0 0.2 3 21 881 899 880 902 0.73 18 23 0.00011 0.016 17.0 0.2 2 23 908 929 907 929 0.96 19 23 0.0052 0.77 11.6 3.2 1 23 993 1016 993 1016 0.95 20 23 2.3 3.4e+02 3.3 0.4 3 23 1046 1067 1044 1067 0.94 21 23 6 8.8e+02 2.0 0.9 1 23 1073 1095 1073 1096 0.93 22 23 0.23 35 6.4 1.7 1 23 1105 1127 1105 1127 0.96 23 23 0.022 3.2 9.7 1.2 1 23 1137 1159 1137 1159 0.97
Sequence Information
- Coding Sequence
- ATGTCACGATTACATCACATTCAACCAGAGGTATCAATTTTTGCTGTTTCTCCAAATCCTCCACCCAAACCTAGAAAAATAAAGAGTGAACCTCCACCTTTAAAACCGGCAATATGGCCAACCAAACAACCAGTGGCATCTATGCAACTCCAACAATTCTTGAAAGCTCAGCGTCTGAATCAAAAGTTACCAGTACAAAGAGGACCTCCACCACTAAATAAAATGCAATACTTTGCTAATGATAGCCGTACAGAGTATCAAAAACAACAACAGCAAATGCATCAAAAACTAATGCAACAGCGTATGGCTAACAATAATTGTATTAGAGAGGATTCACCAAATCCAATGGATTTCCTTGAGATTGGTGTTCATCTGGGTGTTCATTCTAGTAATAGTATTGTTAATAATAATCCAAAAGAAACTAAACCAAAATCAATTATCAAAACGGTCGGAAGTATATTACAATCAGATTCAAGTAGTCGCCGAAAAAATGCTAATCCTAGAAAAGTAGCTCGAGAAAATGAAATTGAACCAGTGAGGCCTAGTGATCATTTCTTGTTATCTCAGAGCAAACAAGAAAATCTTCGTCAATCCTGTTTATTATGTGAACGAAATTTTAGTAACAAATTTGATCTTAGTCAACATATATCTGAAGTTCACGGTATTGAACCATCAGATTTACATCAGTTGAATGGGAATGTTGGTGAAGATGAAGAACTTGCTGAAAGTATGATGGAAGCCGAAACTGTATTCTTTTGTGAAGTATGTACTAGAGAATTTCAAGACAAAGCTAGCCTCTGGTTACATATGGTCAGAGGTCATAAACAAGAAGCCGCAGTGACATGTGGTGTATGTATGAAAATCTGTAGTGATAGCAAATCTCTAATGGAGCACGTTAATACCCAACATCCAAAAAGTAGCGACACTGCTGATTCTATTCAGCGTAGGTATAGATGTCAAGTGTGTGCTCGACAGCATGATACTAAGAAAAAAATGATGAGACATGTTGTCATTCATACAGTTTATGACAATGATGGTCAAATTATAGATCCTGATAAATTAATAATTATCAATAATAATTTTCATCCTACCAAAGCTTCAAATAATGAACATTATACAATTAGTTGTCAAGTGTGTCACAAAGTATTTCCAAGTGAAGAAAAACTTTTACGACACATGTCTTCGATTCATCTTATGACTGGTTGTGATGATATGATAACAACAGCTGTAGCTACCACTGGTAATTCTTCTCAGAGTAGTTTTGTGAATCGTTGCGAATTATGTGGTGAGTCATGTAGTTCCCGAACGGAAAAATGGTGGCATGTCCTCAAAGTTCATGGCACTGATGAAACACTTATATGCCCTAAACCAGATTGTAGAAAATTATTTGTGTCACAATCCTTACAAATTGAACATCAAGCTCATCATGAAACTCAAGGCGATATCCCAAATACTTGTGAAGTTTGTGGTCGATTATGGCCTAATCGAAATGATTTTTATAAACACATAATGGCTGTACATGCAGAATGCATGCCTTTGTTATGTGGTATATGTTTAAAAGTGCATCTAGATGTTCCAAAACTCAGAGAACATATAAAAGAAAAACATGAGCCTTTAGTATCAAAAGAGAATGCTATTTATTGCGATATATGTGGGCGAACTTATACTAAATGGTCAAAAATGATGAGGCATAGATCAATTCATAATATTGAGGATCAAGTGTCTCATTTCGTAACAGATCAGCTTACAGAAGTGAATCTGAAGTGTACATTGTGTCCAGATACAGAATTTAAAACTGTTGAAGAAATATCTGAACACCGTAAAAATGACCATCAATTGCATGTATGTGATCTTTGTTCTAAGTACTACAGTGGCAACAATCATTTATGGAAGCATGTCAGTAGGCAACACAAAGGTCATCCGGATGTCACATGTAGTTTATGTGCGCGTACATCTGCTTCTAAAGTTCACCTTAAAAGACATATGATAAAATATCATTCTGATCCTGTTAGTCAGCTAATAGATAAGTCAAATAATGATAGCTATGTTGAAATAAATACTATTCATCAATGTCATAGATGCGAAAAAGTGTTTAGGATTAGAAGTTTACTGAAAAAACATTTGAAATACTGTAAAGGTAAAAAAGCTGATGTAATACCAGTGTCCAAAGAAAAAGGTCACTATCCTTGTCTAAAATGTGGCAAAACTTTTGAATATCACAACTATTTAAATAGACATTTAAGACACAGCCATCAAATACAGCATTGTGAAATATGTTCTGAAGATTCTGGTGAGCATTTTGATAGTAAAATGCTATTATTGGATCATATTAAAGAAAAGCATAGAAATGATCCTGAATTATGTTGTGATGTTGAAGGTTGTAATAAAGTTCTAAGAACTAAAGCCGATTGCCAAAAACACAAACGTGAACATGCTCGTAATAAAGTGTTTTCATATATATGTGAATTTTGTGGAGATATGCACTCCAATAAGAAAAACTTTAGAAAACACTTGCGGCAACGACATAAAGGAAACACTCAATATTTATGTGGTGTATGTATGGAAGTATGTGTTGATAGTGATGGTTTATCAAAACATTTGCATGAAGTTCATCCTCAGACATTTACTAAATCAAATATTTGCCAACTGTGTGGAAAAATGTTTACAGTTGGAAATAAAGTTGGAGAACATATTGATAAAACCCACGGAAAAAATTTAAAACCATGTAAAATCTGTTGGAAAGTATTTAGTGATATGGATAAACTTAAAGAACACATTGAAAATCATCCTGCAAAAGAAGAGTCTCCCAAAACGCCCGTAAAAAAACCAATTGAACCTAAACCGAAAGTTCCTAAGCTTTATGGTCTTCCTAAAGAACTAGCTGAACTTGGTTTCAATGAAGAGCAACAGGAAAATTTAAAACGAGATATAGATGATGTTACATCAGATATAAACACTAAAAGACTGAGAAAATTACATTCGTGTACAGTTTGTTATAAAAGCTTTAGATTTGAAACTGATCTATTTGATCACAAAAGAGAAGAACATTCAATAATTGAAGATAGTTATGTAGAAGAAGAAACTCAACGTAAAGAACAACAACTACCTGCTCCTAAAAGTGGTAAAAAAACAATTTGTGGAATATGCAGAAAAGAATGGATAAGTTTGAAACATTTTTGGCAACATTTAATTAGAGCTCATCGTCCTGAAGCTGCTTTTGTTTGTGGTGTTTGCTGTCAAATAACTGCAAGTTATGATGACTTGTCTGTACATTTAGATAACCACCATCCAAATGCCACAGTTTTATCATTATTTTCTTGTGATATATGTGGTCGTAATCACAATGCCTTTTCAAAACTTCAGAAACATCGAATTATTCATTCAAATGCGCCTTCAACCATACAAAAATATCATTGCGATGAGTGTGAACTTGTATTTAATACAAAGTCATTTGGGGAAAAACATATTTTGTCCCATGGTCCTGGTAGTaaattatgcaaaggaaaagagttgtgtcaagaaatggatgatgatatgttagaggatcaaatggaagaagaagaagaagttgtagatagtggagacgctgaaacagaaaataaagaagatgatgatgatgatgatgacgatgatgatgaagaagaagaagaaaacgaacaaaatgatggtgatgaagatgatgataatgaacaaaatggtgacatagatgaagaagaaactgaggagaatgttgaagatgacaatgatgatcaaaatgaagatgtagatgctgaagaagataaagacgaagttgaagcagatgatgaagaaaatagtgtggacgatctagatgacatagaagaaaatggtgttgatgatcaagatgatatagaggaagatggtattgatgatcaagatgataatgaccaggaaaataaagaaccagatgatgatgatgacgatgacgatgaCGTTTAA
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPTKQPVASMQLQQFLKAQRLNQKLPVQRGPPPLNKMQYFANDSRTEYQKQQQQMHQKLMQQRMANNNCIREDSPNPMDFLEIGVHLGVHSSNSIVNNNPKETKPKSIIKTVGSILQSDSSSRRKNANPRKVARENEIEPVRPSDHFLLSQSKQENLRQSCLLCERNFSNKFDLSQHISEVHGIEPSDLHQLNGNVGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICSDSKSLMEHVNTQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNEHYTISCQVCHKVFPSEEKLLRHMSSIHLMTGCDDMITTAVATTGNSSQSSFVNRCELCGESCSSRTEKWWHVLKVHGTDETLICPKPDCRKLFVSQSLQIEHQAHHETQGDIPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHLDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNIEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVSQLIDKSNNDSYVEINTIHQCHRCEKVFRIRSLLKKHLKYCKGKKADVIPVSKEKGHYPCLKCGKTFEYHNYLNRHLRHSHQIQHCEICSEDSGEHFDSKMLLLDHIKEKHRNDPELCCDVEGCNKVLRTKADCQKHKREHARNKVFSYICEFCGDMHSNKKNFRKHLRQRHKGNTQYLCGVCMEVCVDSDGLSKHLHEVHPQTFTKSNICQLCGKMFTVGNKVGEHIDKTHGKNLKPCKICWKVFSDMDKLKEHIENHPAKEESPKTPVKKPIEPKPKVPKLYGLPKELAELGFNEEQQENLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLFDHKREEHSIIEDSYVEEETQRKEQQLPAPKSGKKTICGICRKEWISLKHFWQHLIRAHRPEAAFVCGVCCQITASYDDLSVHLDNHHPNATVLSLFSCDICGRNHNAFSKLQKHRIIHSNAPSTIQKYHCDECELVFNTKSFGEKHILSHGPGSKLCKGKELCQEMDDDMLEDQMEEEEEVVDSGDAETENKEDDDDDDDDDDEEEEENEQNDGDEDDDNEQNGDIDEEETEENVEDDNDDQNEDVDAEEDKDEVEADDEENSVDDLDDIEENGVDDQDDIEEDGIDDQDDNDQENKEPDDDDDDDDDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- -
- 80% Identity
- -