Smay001684.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000087.1:300036-304741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00089 0.16 13.6 0.4 2 23 152 174 151 174 0.93 2 23 0.00099 0.18 13.5 0.2 1 23 205 228 205 228 0.95 3 23 0.09 17 7.3 0.8 2 23 235 257 234 257 0.96 4 23 8.9 1.6e+03 1.0 1.8 1 23 271 293 271 293 0.93 5 23 4.5e-05 0.0084 17.7 0.6 2 23 329 351 328 351 0.95 6 23 0.63 1.2e+02 4.7 0.3 3 23 408 430 406 430 0.93 7 23 0.85 1.6e+02 4.2 0.1 2 23 439 461 439 461 0.93 8 23 3.8e-05 0.007 17.9 0.3 2 23 501 522 500 522 0.96 9 23 0.014 2.6 9.8 3.2 1 23 568 591 568 591 0.95 10 23 0.0018 0.33 12.7 1.6 2 23 598 620 597 620 0.96 11 23 0.0069 1.3 10.8 1.6 1 21 643 663 643 664 0.91 12 23 1e-05 0.0019 19.8 4.7 1 23 681 704 681 704 0.97 13 23 3.6 6.6e+02 2.3 1.0 7 23 718 735 708 735 0.84 14 23 2 3.6e+02 3.1 2.7 3 23 743 765 741 765 0.92 15 23 1.8 3.3e+02 3.2 4.0 1 23 772 795 772 795 0.95 16 23 0.91 1.7e+02 4.2 0.1 1 23 801 824 801 824 0.90 17 23 0.13 25 6.8 0.1 3 23 834 855 833 855 0.87 18 23 7.6e-05 0.014 17.0 0.2 2 23 861 882 860 882 0.96 19 23 0.006 1.1 11.0 3.1 1 23 948 971 948 971 0.95 20 23 1.2 2.3e+02 3.7 0.5 2 23 999 1021 998 1021 0.94 21 23 1.5 2.8e+02 3.5 1.1 1 23 1027 1049 1027 1050 0.94 22 23 0.21 38 6.2 2.3 1 23 1059 1081 1059 1081 0.97 23 23 1 1.9e+02 4.0 0.2 1 13 1091 1103 1091 1111 0.86
Sequence Information
- Coding Sequence
- atgtcacgATTACATCACATTCAACCAGAAgtaTCAATTTTTGCTGTCTCTCCAAATCCACCACCTAAACCAAGGAAAATTAAGAGTGAACCTCCACCTTTGAAACCAGCAATATGGCCTGTGAAACAACCTGTGGCATCTATGCAATTACAGCAGTTTTTAAAAGCGCATCGCCTAAGTCAAAAGCAATCTtatccgGATGATTCACCAAACCCAATGGATTTTCttgaaattgGTGTTCATGCTGGAAATAGtatcatcaataatatttctaGAGATATAAAAccgaaaactaattttaaatctggaGGAAGCTTATTGTCACAATCAGATTCTGGTAGTCGTCGCAAAAATGCCAATCCAAGAAAAGTCGCTCGAGAAAATGACATAGAACCACCAGGACCAAGTGATCATTTCTTGTTATCtcaaataaaacaagaaaatctTCGTCAATCTTGTTTACTCTGTGAACGTAATTTCAGTAACAAATATGATCTAAGTCAACATATATCTGAAATACACGGTATTGAACCTGctgatttacataaattaaatggaaatttaGGAGAAGATGAAGAACTTGCCGAAAGTATGATGGAAGCTGAAACTGTGTTCTTTTGTGAAGTATGTACAAGGGAATTTCAAGATAAAGCTAGTCTGTGGTTACATATGGTCCGAGGTCATAAGCAAGAAGCTGCAGTAACATGCGGTGTATGCATGAAAATCTGCAATGATAGTAAATCTCTAATGGAACATGTTAATACTCAACATCCTAAAAGTAGTGATACTGCTGATTCTATACAACGTCGGTATAGGTGTCAGGTGTGTGCCCGGCAACATGATACCAAAAAAAAGATGATGAGACATGTTGTTATTCATACAGTTTATGATAATGATGGTCAAATTATAGAtcctgataaattaattataattaataataattttcatccaACCAAAGCTTCAAATAATGACCATTACACAATAAGTTGCCAAGTATGTCATAAAGTATTTCCAAGTGAAGAAAAACTCTTACGGCATATGTCATCAGTTCATTTAATGACTGGTTGTGATGATATGATAACTACAACTGTGACAACTACTAGTAACTCTTCTCAAAGTAGTTTTGTAAATCGTTGTGAATTATGTGGCGATTCTTGTGGTTCTCGTACTGAAAAATGGTGGCATGTGCTTAAAGAACATGGCACAAATGAAGCTCTTATTTGCCCAAAACCAGACtgtagaaaattatttgtatcacAAGCTTTACAAATTGAACATCAATCTCATCATGAAACTCAAGGTGATCTTCCTAACACATGTGAAGTATGTGGTCGGTTATGGCCTAATCGAAATGACTTCTATAAGCACATAATGGCTGTACATGCTGAATGTATGCCTTTATTGTGTGGTATATGTTTAAAAGTTCATATTGATGTACCAAAACTGAGAGAACATATTAAAGAGAAACACGAGCCTCTAGTATCAAAAGAAAATGCTATTTATTGCGATATATGTGGTCGTACTTATACAAAATGGTCAAAAATGATGAGGCATAGAGCAATACACAATGTTGAAGACCAAGTATCTCATTTTGTAACAGATCAGTTAACAGAagtgaatttaaaatgtacattgtgCCCAAATACTGAATTCAAAACTGTTGAAGAAATATCTGAACATCGAAAAAATGACCATCAATTGCATGTATGTGATCTTTGTTCAAAATACTATAGTGGAAACAATCATTTATGGAAACATGTTAGTAGGCAACACAAAGGTCATCCGGATGTTACTTGTAGTCTATGTGCTCGTACATCAGCTTCTAAAGTACATCTCAAAAGgcatatgataaaatatcattcTGATCCTGTAGATCAGCTTATTGACAaatcaaataatagtaattgtgCTGAAGTAAATTCCATTCATCAATGTATTAGATGTGACAAAGTGTTTAGAATTAGGAGTCTATTAAAAAAACATCTCAAATATTGTAAGGGTAAAAGAGATGCAATGTCAGTACCAAAAGAAAAAGGTCATTATCCTTGTCCAAAATGTGGTAAAACATTTGAGTatcatacttatttaaatagacATTTAAGGCACAGTCATTTAGTTCAACATTGTGAGTTATGTTCTGAAGATAAAACAGGTGAACACTTTGatagtaaaatgttattaatggaTCATATCAGAGAGAAACATGGAAAAGATCCAGAGTTATGTTGTGATGTTGAAGGTTGTGGTAAAGTTATGAGAACAAAAGCAGATTGCCAAAAACATAAACGTGATCATATTCGTAAAGTGTTTTCGTATATATGTGAATTTTGTGGAGATAtgcattcaaataaaaaaacttatagaaAACATTTGCGGCAGCGTCACAAAAGCAATACCCAATATTTATGTGGTGTGTGTATGGAAGTATCTGTTGATAGTGATAGTTTGTCAAAACACTTGCATGAAGCGCACCCTCAAACTTTTACCAAATCTAATATTTGTCAGCTCTGTGGGAAAATGTTTAGTGTTGGAAGTAAAGTTGGGGAGCATATTGACAAAATccatggaaaaaatttaaaaccctgTAAAATATGTTGGAAAGTATTTAGTGATATGGATAAACTTAAAGACCATATTGAAAACCATCCAGCAAAAGAAGATTCCCCTAAAGCTTCTACGCCtgtcaaaaaattaattgaacctAAACCAAAAACTCCTAAGCTGTATGGACTTCCAAAAGAATTAGCTGAACTTGGTTTCAATGAAGAACAACAGGAAAATTTAAAACGAGATATAGATGATGTAACATCAGACATAAACACAAAGAGACTGAGAAAATTACATTCTTGTACTgtttgttataaaagttttagatTTGAAACCGATTTATATGATCACAAAAGGGAAGAACATTCTATTATTGAAGATAGTTATATGGAAGAAGAAACTGAGCGTAAGGAAGTACAACCATCTTTACTGAGAAATAAAAGAACTGTTTGTGGTTTATGTAAAAAAGAATGGGTAAGTTTGAAACATTTTTGGCAACATCTTATTAGAGCTCATCGTCCACAAGCTGCTTTTGTTTGTGGTATTTGTTGTCAAATAACTTCAAGCTATGATGACTTAGCATTGCATTTGGACAATCATCATCCAAATGCTAcagttatatcattattttcctGTGATGTTTGTGGTCGTAACCACAATGCATTTTCCAAACTTCAAAAACACCGTAATATTCATTCAAATGCACCACCCACATTCCCTAAATATCATTGCGATGAATGTGAACTTGTATTCAATTCTAAGTTATTTggtgaaaaacatattttgtgtCATGGTCCAGGGAGTAAATTATGCAAGGGAAAAGATTTATGTCAAGAAATGGATGATGATATGTTGGAAGAACAAACAGAGGAAGAAGaagaggaggaggaggaggaagAAGTGGAAAATGGTGGAGATGCTGAAACAGAAACTAAAGgagacgatgatgatgatgatgaagaagaagaagaagaagaagaagaggttGAACAAATTGATGATGGAGATGAAGATGATAATGAACAAAATGATGAAGTAGAAGATGAAGAGGAAACTGAACAGAATgcagatgatgatgatgatgatgaacaAAATGATGATATTGATGCTGAAGAAGATAAAGACCAAGTCGAAgctgatgataatgatgatgatgatgatgtagAAGAAAATGgtgttgatgatgatgatgatgaggaGGAAGAGCAAGAagacgacgatgatgatgatgatgatgatgatgatgatgaagaagaagaagatgaagtCTAG
- Protein Sequence
- MSRLHHIQPEVSIFAVSPNPPPKPRKIKSEPPPLKPAIWPVKQPVASMQLQQFLKAHRLSQKQSYPDDSPNPMDFLEIGVHAGNSIINNISRDIKPKTNFKSGGSLLSQSDSGSRRKNANPRKVARENDIEPPGPSDHFLLSQIKQENLRQSCLLCERNFSNKYDLSQHISEIHGIEPADLHKLNGNLGEDEELAESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGVCMKICNDSKSLMEHVNTQHPKSSDTADSIQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDKLIIINNNFHPTKASNNDHYTISCQVCHKVFPSEEKLLRHMSSVHLMTGCDDMITTTVTTTSNSSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNEALICPKPDCRKLFVSQALQIEHQSHHETQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHIDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRAIHNVEDQVSHFVTDQLTEVNLKCTLCPNTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCARTSASKVHLKRHMIKYHSDPVDQLIDKSNNSNCAEVNSIHQCIRCDKVFRIRSLLKKHLKYCKGKRDAMSVPKEKGHYPCPKCGKTFEYHTYLNRHLRHSHLVQHCELCSEDKTGEHFDSKMLLMDHIREKHGKDPELCCDVEGCGKVMRTKADCQKHKRDHIRKVFSYICEFCGDMHSNKKTYRKHLRQRHKSNTQYLCGVCMEVSVDSDSLSKHLHEAHPQTFTKSNICQLCGKMFSVGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKEDSPKASTPVKKLIEPKPKTPKLYGLPKELAELGFNEEQQENLKRDIDDVTSDINTKRLRKLHSCTVCYKSFRFETDLYDHKREEHSIIEDSYMEEETERKEVQPSLLRNKRTVCGLCKKEWVSLKHFWQHLIRAHRPQAAFVCGICCQITSSYDDLALHLDNHHPNATVISLFSCDVCGRNHNAFSKLQKHRNIHSNAPPTFPKYHCDECELVFNSKLFGEKHILCHGPGSKLCKGKDLCQEMDDDMLEEQTEEEEEEEEEEEVENGGDAETETKGDDDDDDEEEEEEEEEVEQIDDGDEDDNEQNDEVEDEEETEQNADDDDDDEQNDDIDAEEDKDQVEADDNDDDDDVEENGVDDDDDEEEEQEDDDDDDDDDDDDEEEEDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- iTF_01170121;
- 80% Identity
- -