Elan017898.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:45504170-45508400[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0026 0.35 12.0 0.6 2 23 205 227 204 227 0.93 2 23 0.00092 0.12 13.5 0.2 1 23 258 281 258 281 0.95 3 23 0.048 6.4 8.1 0.9 2 23 288 310 287 310 0.96 4 23 8.3 1.1e+03 1.0 1.8 1 23 324 346 324 346 0.93 5 23 2.7e-05 0.0036 18.3 0.7 2 23 382 404 381 404 0.95 6 23 0.25 33 5.8 0.5 3 23 462 484 460 484 0.92 7 23 0.8 1.1e+02 4.2 0.1 2 23 493 515 493 515 0.93 8 23 3.2e-05 0.0043 18.0 0.6 2 23 555 576 554 576 0.96 9 23 0.013 1.8 9.8 3.2 1 23 622 645 622 645 0.95 10 23 0.00056 0.074 14.1 2.2 2 23 652 674 651 674 0.96 11 23 0.00043 0.058 14.5 2.0 1 21 697 717 697 718 0.95 12 23 1.1e-05 0.0014 19.5 3.5 1 23 735 758 735 758 0.97 13 23 3.3 4.5e+02 2.3 1.2 3 23 763 789 762 789 0.79 14 23 7.6 1e+03 1.1 3.1 3 23 797 819 795 819 0.91 15 23 0.96 1.3e+02 4.0 4.0 1 23 826 849 826 849 0.96 16 23 0.25 33 5.8 0.5 1 23 855 878 855 878 0.91 17 23 0.13 17 6.7 0.1 3 23 888 909 887 909 0.87 18 23 7.2e-05 0.0096 16.9 0.2 2 23 915 936 914 936 0.96 19 23 0.0013 0.18 13.0 2.9 1 23 1002 1025 1002 1025 0.95 20 23 0.89 1.2e+02 4.1 0.2 2 23 1053 1075 1052 1075 0.94 21 23 1.5 2e+02 3.4 0.4 1 23 1081 1104 1081 1104 0.94 22 23 0.34 45 5.4 1.6 1 23 1113 1135 1113 1135 0.94 23 23 0.0053 0.71 11.1 1.2 1 23 1145 1167 1145 1167 0.97
Sequence Information
- Coding Sequence
- ATGGAACATAATCAGTTCACACAAAATAATAAAATGTCACGATTACATCACATTCAACCAGAAGTTTCCATTTTTGCTGTTTCTTCAAATCCTCCTTCTAAACCAAGGAAAATTAGAAGCGAACCGCCACCATTAAAACCTGCTATATGGCCTACCAAGCAACCTGTTGCTTCTATGCAATTGCAACAATTCTTAAAAGCTCAACGTCTAAGTCAAAAATTACCCGTGCAAAGAGGGCCCCCACCACTAAACAAAATGCAATATTTTGCTAATGATAGTCGTACTGAATATCAAAAACAACAACAGCATATGCATCAAAAACTTATGCAACAGCGTATGGCTAACAATAATAGTATTCCTGAAGATATACCAAATCCGATGGATTTTCTTGAGATTGCTGTTCATGCTGGTAATAATATCATAAATAATATTCCAAGAGATGTAAAATCGAAATCTAATTTCAAATCGGGAAGAAATGTATCACAATCTGATTCTGGGAGTCGTCGAAAGAATGCTAATCCAAGAAAGGTGGCTCGGGAAAATGAAATTGAATCACCTGGACCAAGTGATCATTTCTTGTTATCCCAGATTAAACAAGAAAACCTTCGACAATCCTGTTTGTTGTGTGAACGGAATTTTACCAACAAATTTGATCTAAGTCAACACATATCTGAAGTACATGGTATCGAGCCGTCAGATTTACATCAGTTAAATGGAAATTTAGGTGAAGATGAAGAACTAGTTGAAAGTATGATGGAAGCAGAAACAGTATTCTTTTGTGAAGTCTGTACAAGGGAATTCCAGGACAAAGCCAGTCTTTGGCTACATATGGTCAGAGGTCATAAACAAGAAGCTGCAGTGACATGTGGTATATGCATGAAAATTTGTAATGATAGTAAATCACTTATGGAACATGTAAATACTCAACATCCTAAAAGTAGTGATACTGCTGATTCTGTACAACGTAGATACAGATGTCAAGTATGTGCTCGGCAACATGATACAAAGAAGAAAATGATGAGACACGTAGTCATTCATACTGTGTATGATAATGATGGTCAAATTATAGATCCTGATCAATTAATTATAATTAACAATAATTTTCATCCAACTAAAGCTTCTAACAATGAGCATTACACAATTAGTTGTCAAGTTTGTCACAAAGTGTTTCCAAGTGAAGATAAACTTTTAAGACATATGTCTTCAGTTCATTTAATGACTGGTTGTGATGACATGATAACAACAACTGTTGCAACAACTACAAGTAGTTCTTCACAAAGTAGTTTTGTTAACCGTTGTGAATTATGTGGCGATTCATGCGGTTCACGTACTGAAAAATGGTGGCATGTACTCAAGGAGCATGGCACAAATGAAACACTTATATGCCCGAAACCAAACTGTAAAAAACTATTTGTATCACAATCTTTACAAATCGAGCATCAAGCTCATCATGAAACCCAAGGTGATCTTCCTAACACATGTGAAGTATGCGGGAGGTTATGGCCTAATCGAAATGATTTTTACAAACACATAATGGCTGTGCATGCAGAGTGTATGCCTCTATTATGTGGAATATGTTTAAAAGTTCATGTCGATGTACCAAAACTCAGAGAACATATAAAAGAAAAACATGAGCCTTTAGTATCAAAAGAGAATGCTATATATTGTGATATATGTGGCCGCACCTATACAAAATGGTCAAAAATGATGAGACATAGATCAATACACAATGTTGAAGATCAGGTATCTCATTTTGTAACAGATCAGCTGACAGAAGTAAATCTAAAGTGTACATTATGTCCGGATACAGAATTTAAAACTGTAGAAGAAATATCTGAACATCGTAAAAATGACCATCAACTGCATGTGTGTGATCTTTGTTCGAAATATTACAGTGGTAACAATCATTTATGGAAGCACGTTAGTCGGCAACATAAAGGTCATCCAGATGTCACATGTAGTTTATGTTCACGTACATCTGCTTCAAAAGTTCACCTCAAAAGACATATGATAAAATATCATTCTGATCCTGTAGATCAGCTTATAGACAAGTCAAATAATAGAAATTGTGCAGAAATAAATTCTGTTCACCAATGTATGAGGTGTGACAAAGTTTTTAGGATTAGAAGTCTGTTGAAGAAACATCTTAAATACTGCAAAGGTAAAAGAGATGCAATGCCAGTACCTAAAGAAAAAGGACATTACCCATGTCCAAAATGTAGTAAAACATTTGAATATCAAACTTACTTAAATAGACATTTAAGGCATAGTCATTTAGTTCAGCACTGTGAAATTTGTTCCGAGGATAAAACCGGTGAACATTTTGATAGTAAAATGTTATTGATGGATCATATTCGTGATAAACACAGAGATGATCCTGAATTGTGTTGTGACATTGAAGGCTGTGATAAAGTAATGAGAACAAAAGTCGATTGTCAGAAACACAAACGTGATCATGTCCGTCGAGTATTTTCATATGTATGTGAATTTTGTGGAGATATGCATTCGAATAAAAAAACCTATAGGAAACACTTACGTCAACGGCACAAAGGCAACACTGAATATTTATGTGGTGTATGCATGGAAGTATGTGTCGATAATGATGGATTAACTAAACATTTGCATGAAGCACACCCTCAGACATTTACTAAATCGAACATTTGTCAACTCTGTGGGAAAATGTTCACAGTAGGAAGTAAAGTTGGTGAACACATAGACAAAATTCATGGAAAAAATCTAAAACCTTGTAAAATCTGTTGGAAAGTGTTCAGTGACATGGACAAACTTAAAGACCACATTGAAAATCATCCAGCAAAAGCAGACTCTCCCAAAGCAGCTACACCTGTTAAAAAACCAATAGAGCCCAAACCAAAAACTCCTAAGTTATATGGTCTTCCTAAAGAATTAGCCGAACTCGGTTTTAGTGAAGAACAACAAGAGAATTTGAAACGAGACATAGAAGATGTTACATCGGACATAAACACAAAGAGACTGAGGAAATTACATTCGTGTACAGTCTGTTACAAAAGTTTTAGATTTGAATCTGATCTGTATGATCACAAAAGAGAAGAGCATTCTATTATCGAAGATAGTTTTATGGAAGAGGAGACCACTGAACGTAAAGAACAATCTTCTGCAATAAAAAGTAAAAAGATTGTGTGTGGAATATGTAGAAAAGAATGGATTAGTTTAAAACATTTTTGGCAACATTTAATAAGAGCTCATAGAGCAGAAGCTGCGTTTGTTTGTGGTATTTGTTGTCAAATAACTTCGAGTTATGATGATTTGTCTTTACATCTAGACGTCTACCATCCTAACTCCACAGTTTTATCATTATTTTCCTGTGATATTTGTGGTCGTAATCATAATGCATTTTCAAAACTACAGAAACATCGTGTAATTCATTCAAATGTATTAACTGAGTCTCCAAAATTTCACTGTGACGAGTGTGAACTTGTATTCAATACAAAGTCTTATGGTGAAAAACATATTTTAAGCCATGGCCCTGGCAGTAAATTATGTAATGGGAAAGATTTGTGTCAGGAAATGGATGATGACATGTTGGAAGAACAAATAGAGGAGGAAGAAATTGAGGAAGACGATGGTAATGCTGAAACAGAAAACAAAGATGATGATGATGATGATGATGACGATGATGAGGAGGTAGAACAAAATGATGACGAGGGGGAAGATGATGATAATGAAGAGGAAACCGAACAGCAAAATGTGGAGGATGATGATGATGATGCTGATGTTGAGGATGACAAAGAACAAGTCGAAGTGGATGATGATGATGAAGATGATGATGAAGTGGAACAAAATGGTATTGACGATCAGGATGATGATGATGAAGAACAAGAGGAAGAAGATGACGATAATGACGATGAAGTCTAA
- Protein Sequence
- MEHNQFTQNNKMSRLHHIQPEVSIFAVSSNPPSKPRKIRSEPPPLKPAIWPTKQPVASMQLQQFLKAQRLSQKLPVQRGPPPLNKMQYFANDSRTEYQKQQQHMHQKLMQQRMANNNSIPEDIPNPMDFLEIAVHAGNNIINNIPRDVKSKSNFKSGRNVSQSDSGSRRKNANPRKVARENEIESPGPSDHFLLSQIKQENLRQSCLLCERNFTNKFDLSQHISEVHGIEPSDLHQLNGNLGEDEELVESMMEAETVFFCEVCTREFQDKASLWLHMVRGHKQEAAVTCGICMKICNDSKSLMEHVNTQHPKSSDTADSVQRRYRCQVCARQHDTKKKMMRHVVIHTVYDNDGQIIDPDQLIIINNNFHPTKASNNEHYTISCQVCHKVFPSEDKLLRHMSSVHLMTGCDDMITTTVATTTSSSSQSSFVNRCELCGDSCGSRTEKWWHVLKEHGTNETLICPKPNCKKLFVSQSLQIEHQAHHETQGDLPNTCEVCGRLWPNRNDFYKHIMAVHAECMPLLCGICLKVHVDVPKLREHIKEKHEPLVSKENAIYCDICGRTYTKWSKMMRHRSIHNVEDQVSHFVTDQLTEVNLKCTLCPDTEFKTVEEISEHRKNDHQLHVCDLCSKYYSGNNHLWKHVSRQHKGHPDVTCSLCSRTSASKVHLKRHMIKYHSDPVDQLIDKSNNRNCAEINSVHQCMRCDKVFRIRSLLKKHLKYCKGKRDAMPVPKEKGHYPCPKCSKTFEYQTYLNRHLRHSHLVQHCEICSEDKTGEHFDSKMLLMDHIRDKHRDDPELCCDIEGCDKVMRTKVDCQKHKRDHVRRVFSYVCEFCGDMHSNKKTYRKHLRQRHKGNTEYLCGVCMEVCVDNDGLTKHLHEAHPQTFTKSNICQLCGKMFTVGSKVGEHIDKIHGKNLKPCKICWKVFSDMDKLKDHIENHPAKADSPKAATPVKKPIEPKPKTPKLYGLPKELAELGFSEEQQENLKRDIEDVTSDINTKRLRKLHSCTVCYKSFRFESDLYDHKREEHSIIEDSFMEEETTERKEQSSAIKSKKIVCGICRKEWISLKHFWQHLIRAHRAEAAFVCGICCQITSSYDDLSLHLDVYHPNSTVLSLFSCDICGRNHNAFSKLQKHRVIHSNVLTESPKFHCDECELVFNTKSYGEKHILSHGPGSKLCNGKDLCQEMDDDMLEEQIEEEEIEEDDGNAETENKDDDDDDDDDDEEVEQNDDEGEDDDNEEETEQQNVEDDDDDADVEDDKEQVEVDDDDEDDDEVEQNGIDDQDDDDEEQEEEDDDNDDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340860;
- 90% Identity
- -
- 80% Identity
- -