Cpyg007605.2
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- Rfx2
- Assembly
- GCA_031762395.1
- Location
- JASANN010000341.1:36528-44696[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-37 1.1e-33 115.7 0.0 2 78 357 433 356 434 0.97
Sequence Information
- Coding Sequence
- ATGGTTGATTTTTCTGACATGGGGTTTGACACAGAGTCATCCCTTCAAAAgagaggaggtggtggtggagaTACAGCCAGTGTGGAGAGAGACGAGGGAGTTATCACCATGACTACCACTGGAGCCCAGTATGCTCTCACAGCATCCGCTGGAACTACCAATGGCAGGGGTAGTTCCGGCACAGTGGGGGCTGATGTCAAACCGAACGTTGTTGTCGTGACTACCTCTAGCTCCAGTGGCAGTGGTAGTGCTGCACAGAGTCAGTCCACAAGAGGTCAACAACTTATCACTGTGGTTACAAGTACTGACCCTTCAAGTCCGAACAACCTTCAACCCATTCAGttaTTGGTTCAGGATCCGCTTGAAACAGCTGCAGATTCTTCAAACGGCTCGTCAGGTACCCCTGCGCATGTCACGGCACAAGTCGTAGTTAATACTACTCATACGGCCCAGCACACGCTCGTCGACTCCGACGTCGCCTCCACGTCTGCCGGAACTATCGTCAGCGGATCACCGCACTACATCACTGTCACagGCACCAGTGATTCACCGTCGTACGCATCCCTCACAACGGCTGTAGTGTCAGGCGAAGCCGAGGCAGTGGGTTCCGAATCTGTTTCTCATCCAACTTATGTCCAGTATGTCGAGGGGGATACTTCAACGTATATACCGGCTAACGGACAGATgacaTATCCTGTTTATGCTGTCGGCGAGGCAGGAGCTATGTATACTCCCGCCTCGAGTCAGTATTATACACCGGCTTCTACCCCAGTCACGTATGCCCAGGTCACTGGGCAAGGCTCGAATACCACCACTGGACAACTTCTCTCCCAGGGCAACGGCACCTATTTAATTCAGCAAAGTGTTGTTGATGGAGATCCAACAACACACGCACTTATATCAGCCGCTGCTGCCGCACGTACGAGTCCGCAGACTGAGAGTGCGGAGGCTGTGGTTAGCGGTGGTGGCGGGACATACTTGATCGGCGGTAATTCGGGCGGCACTGCGGTCAGCGTGGAAGAGGCTGCTGCCGCCGCAGCCAACATGACGCATGCCACTAGAGTCTCCCAGGCCACCGTGCAGTGGCTTCTTGAGAACTACGAGACTGCTGACGGTGTTTCCTTGCCTAGATCAACTTTGTACAATCACTACCTCCGTCATTGTTCTGACAACAAGCTGGATCCCGTGAATGCTGCAAGCTTTGGAAAGTTAATTCGTTCCGTATTTCTTGGACTGAGAACAAGACGTCTTGGAACACGGGGTAATTCcaaatatcattattacgGGATCCGCGTCAAGCCAAGCTCCCCGTTAATTATGCTGAATGAGGACGGAACATCCAGACAGCAACCTACGACAAATGCTCAGACGAAACGATTTAAATTCGTTAATCAAAAGCAGGAATCAACATACGACAGCAACGCACActcaaatacaaatatttcttccAACACATCACCGCCGCAGTATCATCAGTACCTTGGAGAGGCGAGTGGAGCTATTCCTGAATTTCCTGAAATTGTCGTTGGACATGGTTCATCCCTACCTGAAGATTGTACTTTGGAGGACATAGACACATTCCGCAGCATATACAGGGAGCACTGCGAGGCCTTTTTGGATGCTGTGCTCAACTTTGAATTTGCCACAGTGGAGAGTCTCTGGCGGGAATTTTGGCGCAGTCAAGACAACAATAATGGTGATGAGTGCGAGGaggagaaatatttatcaaaGACGAAACTTTATCAGATGTGCAAGTGTTCTGAGGTTCAGGACTTCATCAGAAGGGTTGATTATACGTTCTATCAAAATCTTGTCGAAGTACTCATGCCTGACGTACTACGGCCTATTCCAAGTTCGCTGACACAGTCTATCAGAAATTTTGCCAAGGGTCTTGAGTCGTGGCTGACATCTGCCATGAATGACTGTCCCGAGGAAATGATGCAGATCAAGttgACTGCTGTGTCGGCCTTTGCTCAAACTTTAAGACGATACACATCATTGAATCATCTGGCGCAGGCAGCACGAGCTGTGCTTCAGAATTCTAGTCAAATTAATCAAATGCTAGCAGATCTGAATCGTGTTGATTTTCACAATGTACAGGAGCAGGCATCTTGGGTCTGCCAGTGCGATTACGCAGTTGTGCAACGTTTAGAGGCTGACTTCAAGGTCACTTTACAACAACAAAACTCCTTAGAACAATGGGCTGTCTGGTTGAAGGGTGTAGTGACTCAAGTGCTTAAACCATACGAAGGAAAACCTACATTTGCAAAAGCTGCACGACAATTTTTGCTCAAATGGTCCTTTTACAGCTCCATGGTTATTCGTGACCTGACACTGAGAAGTGCTGCTAGTTTTGGATCTTTTCATCTGATTCGGCTGCTCTACGATGAATATATGTTCTATTTGATTGAACATCAGGTCGCCATTGCCACTGGCACAACACCAATCGCTGTAATGGGTGATAAAAGTCAGAATTGCTCATTGGTCAATACTTTCGGAACTACGTCTAACggagaTACGTCAAATAGCAGTCAATCTAAGCGCATGAAACTGAGCTAA
- Protein Sequence
- MVDFSDMGFDTESSLQKRGGGGGDTASVERDEGVITMTTTGAQYALTASAGTTNGRGSSGTVGADVKPNVVVVTTSSSSGSGSAAQSQSTRGQQLITVVTSTDPSSPNNLQPIQLLVQDPLETAADSSNGSSGTPAHVTAQVVVNTTHTAQHTLVDSDVASTSAGTIVSGSPHYITVTGTSDSPSYASLTTAVVSGEAEAVGSESVSHPTYVQYVEGDTSTYIPANGQMTYPVYAVGEAGAMYTPASSQYYTPASTPVTYAQVTGQGSNTTTGQLLSQGNGTYLIQQSVVDGDPTTHALISAAAAARTSPQTESAEAVVSGGGGTYLIGGNSGGTAVSVEEAAAAAANMTHATRVSQATVQWLLENYETADGVSLPRSTLYNHYLRHCSDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLIMLNEDGTSRQQPTTNAQTKRFKFVNQKQESTYDSNAHSNTNISSNTSPPQYHQYLGEASGAIPEFPEIVVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCSEVQDFIRRVDYTFYQNLVEVLMPDVLRPIPSSLTQSIRNFAKGLESWLTSAMNDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYAVVQRLEADFKVTLQQQNSLEQWAVWLKGVVTQVLKPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDKSQNCSLVNTFGTTSNGDTSNSSQSKRMKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00297281; iTF_00294978; iTF_00252550; iTF_00254054; iTF_00293452; iTF_01394864; iTF_01475186; iTF_01130548; iTF_00253301; iTF_01473654; iTF_00292026; iTF_00734305; iTF_00326105; iTF_00652418; iTF_01497122; iTF_00342885; iTF_00668162; iTF_00046696; iTF_00047709; iTF_00905157; iTF_01364369; iTF_00059186; iTF_00058420; iTF_00057662; iTF_00720990; iTF_01378949; iTF_00414036; iTF_00459481; iTF_00863021; iTF_00692646; iTF_01110662; iTF_01112321; iTF_00305397; iTF_01109849; iTF_00969313; iTF_01119969; iTF_00708323; iTF_00707582; iTF_00463748; iTF_00360652; iTF_00845041; iTF_00131700; iTF_00359958; iTF_01428023; iTF_01466839; iTF_01465919; iTF_00131033; iTF_00738814; iTF_00132384; iTF_01467686; iTF_00014473; iTF_01476676; iTF_01089734; iTF_01406246; iTF_01511942; iTF_01233383; iTF_01523113; iTF_01477322; iTF_01355054; iTF_01207087; iTF_00015798; iTF_00181720; iTF_00181071; iTF_00417305; iTF_00016442; iTF_01418748; iTF_01417449; iTF_01475932; iTF_01111498; iTF_00079551; iTF_00690829; iTF_00689900; iTF_01113165; iTF_01190064; iTF_01468561; iTF_01469394; iTF_01056530; iTF_01055709; iTF_01057374; iTF_00050550; iTF_00628845; iTF_01129079; iTF_00045875; iTF_01216531; iTF_00183700; iTF_00965795; iTF_00183038; iTF_00860128; iTF_00864384; iTF_00676437; iTF_00460227; iTF_00882693; iTF_00880972; iTF_00979830; iTF_00064192; iTF_00968534; iTF_00367889; iTF_00877592; iTF_00073461; iTF_00317208; iTF_01001825; iTF_00828516; iTF_01000998; iTF_01560179; iTF_00451673; iTF_00996075; iTF_00996777; iTF_00317207; iTF_01508604; iTF_00316511; iTF_00879359; iTF_00867897; iTF_00730478; iTF_00868511; iTF_01077211; iTF_01390817; iTF_01254542; iTF_00262402; iTF_01298897; iTF_00263100; iTF_00265410; iTF_01269538; iTF_01268741; iTF_01268009; iTF_01270251; iTF_01267284; iTF_01270937; iTF_00085027; iTF_01418113; iTF_00226339; iTF_00733732; iTF_00683913; iTF_00141578; iTF_00229773; iTF_00224302; iTF_00216817; iTF_01070801; iTF_00219546; iTF_00109571; iTF_00216132; iTF_01244964; iTF_01519973; iTF_00862310; iTF_00174759; iTF_01228137; iTF_00729034; iTF_01379754; iTF_00264011; iTF_00264754; iTF_00898507; iTF_00305997; iTF_00798317; iTF_01493325; iTF_01492621; iTF_00729806; iTF_00173904; iTF_00266193; iTF_01513906; iTF_01514577; iTF_01424116; iTF_00127925; iTF_00128705; iTF_00015138; iTF_01422663; iTF_00126442; iTF_01261618; iTF_00127187; iTF_00125652; iTF_01423385; iTF_01421978; iTF_00129468; iTF_01405429; iTF_00840790; iTF_01047990; iTF_01421302; iTF_00286072; iTF_01406968; iTF_00158841; iTF_00773529; iTF_00884793; iTF_01408795; iTF_01513213; iTF_00279710; iTF_00368542; iTF_00385022; iTF_00645695; iTF_00754335; iTF_00765279; iTF_01354367; iTF_00309248; iTF_00867136; iTF_01015552; iTF_01407904; iTF_00760732; iTF_01036764; iTF_00143617; iTF_01035946; iTF_01274219; iTF_01035183; iTF_00286931; iTF_01486867; iTF_00304830; iTF_00686942; iTF_00937759; iTF_00738078; iTF_01482142; iTF_01484383; iTF_00714112; iTF_01380354; iTF_00712586; iTF_01381066; iTF_01489141; iTF_01488268; iTF_00713433; iTF_01214528; iTF_01198403; iTF_01199141; iTF_00770109; iTF_00292677; iTF_00251802; iTF_00294204; iTF_00829221; iTF_00439202; iTF_01100324; iTF_01101801; iTF_01306130; iTF_01102517; iTF_01103286; iTF_00291272; iTF_01474416; iTF_01472913; iTF_00298043; iTF_00295743; iTF_00881739; iTF_00296508; iTF_00168125; iTF_00728414; iTF_01272836; iTF_00350741; iTF_00438491; iTF_01273531; iTF_00437823; iTF_01218815; iTF_01523777; iTF_01464768;
- 90% Identity
- iTF_01539346;
- 80% Identity
- iTF_00295743;