Aerv006962.1
Basic Information
- Insect
- Aphidius ervi
- Gene Symbol
- Rfx2
- Assembly
- GCA_015776835.1
- Location
- MKYW01000119.1:129558-140941[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-36 3.6e-32 110.7 0.0 5 78 308 381 305 382 0.98 2 2 0.74 6.2e+03 -2.2 0.1 17 46 519 548 514 559 0.51
Sequence Information
- Coding Sequence
- ATGACTACAACTGGAGCCCAGTATGCTCTTGCAGCATCAACTGGAACTGGTCATGGCGGGGGTAATTCAAATGTTGTAGAGGTGGATGCTAAACCTAATATTGTCGTTGTCACAACATCAAGTACCAGTGCCAGTGGTAGTGTTGCACAATCACAGACAAGAGGTCAACAACTTATTACTGTTGTTACAAGTACTGATCCATCAAATAATAATAATCTTCAACCAATACAGCTTGTTGTACAGGATTCATTGGAAAACGCTGCTGATTCATCAAATGGTTCATCTGGTACACAGTCACATGTAGTTGTTAATACAACACATTCTGGTCATACAATTATTGATTCAGACGCAGCAACATCATCAACTGGTACAATTGTCAGTGAATCACCTCATTATATTACTGTTACTGTGGCTGGTGAATCAGAAAACGTGGGTTCTGAGTCTGTTTCTCATCCTACTTATGTCCAGTATGTCGAGGGGGATGGATCAACTTATAATCTTACAAATGGACAAATGACATATCCAGTGTATACTGTCGGAGAGACAGGAGCAATGTACACTCCTGCCTCGAGTCAGTATTACACATCAACAAACACACCAGTAACATATGCTCAGGTATCGGGACAAGCAACAAATACAACTGGTCAACTTTTATCACAAGGAAATGGAACATATTTAATACAACAAAGTGTTGTTGATAATGATCCAACAACTCATACTCTCATAACAGCAGCAGCACGTGCAAGTCCACAAACTGATTCAGCTGAGGCTGTGGTTAGCGGGGGTGGCGGGGCATACTTGATCAGTGGTAATGCTGGAGGTGCAACTATCAGCGTTGAAGAGGCTGCCACAGCAGCAGCAAACATGACGCATGCCACTAGGGTCTCACAGGCCACCGTAAGCCATATCGACTCCCCATTTGTTCAATGGCTTTTGGAAAATTATGAAACAGCAGATGGTGTATCATTGCCACGTTCAACACTTTACAATCATTATTTACGTCATTGTATTGATAATAAATTAGATCCAGTTAATGCTGCTAGTTTTGGTAAATTAATAAGATCAGTATTTCTTGGTTTACGAACACGTCGTCTAGGTACAAGAGGTAATTCAAAATATCATTATTATGGAATTCGTGTAAAGCCAAATTCTTCATTAAATATGCTTGATGAAGATGGACGTAGAAATATATCAAATTCAACAAATCAAACAAAACGATCAAAATTTATAAATCCAAAACAAGAACAAGCTTATGATAATAATTCTCATAATAATACAAATGTAACGTCAAACACAACAATACCACAGTATCATCAATTTCTTGGTGAGGCTAGTATTGCTATACCAGAATTTCCAGAAATAATTGTTGGTCATGGATCATCACTTCCTGAAGATTGTACACTTGAAGATATTGATACATTTAGAAGTATTTATCGTGAACATTGTGAGGCATTTTTAGATGCTGTATTAAATTTTGAATTTGCAACTGTTGAAAGTTTGTGGAGAGAATTTTGGCGTAGTCAAGATAATAATAATGGTGATGAGTGTGAAGAAGAAAAATATTTATCAAAAACAAAATTGTATCAAATGTGTAAATGTTGTGAAGTACAAGAATTTATAAAAACAGTTGATTACACATTTTATCAAAATTTAGTAGAAGTTTTAATGCCAGATGTTCTTCGACCAATACCAAGTACATTGACCCAGTCAATTAGAAATTTTGCAAAAGGTCTTGAATCATGGCTGACTGCTGCAATGAATGACTGTCCTGAAGAAATGATGCAAATAAAATTGACAGCTGTATCAGCATTTGCTCAAACTCTCAGACGATATACTTCCTTGAATCATCTTGCTCAGGCTGCACGTGCTGTATTACAAAATTCTAGTCAAATAAATCAAATGTTAGCTGATTTAAATCGTGTTGATTTTCACAATGTACAAGAACAGGCCTCTTGGGTATGTCAATGTGATTATACAGTTGTACAACGTTTAGAAGCTGATTTTAAAGTAACATTACAACAACAAAATTCACTTGAACAATGGGCAATTTGGTTGAAGAGTGTTGTAACACAAGTTTTAAAACCTTACGAGGGTAAACCAACATTTGCCAAAGCTGCTCGTCAATTTTTACTAAAATGGTCTTTCTACAGTTCAATGGTTATTCGTGATCTTACATTGAGAAGTGCTGCAAGTTTTGGATCATTTCATCTTATACGATTACTTTATGATGAGTACATGTTTTATTTAATTGAACATCAAGTTGCACTTGCTACTGGAACAACTCCAATTGCTGTTATGGGAGATAAAAATCAGGGTTGTCAGATAATCAGTAGCTTTGGAAATACATCAAATGGAGATACATCGAATACAAATCAATCAAAACGCATGAAAATGAGCTAA
- Protein Sequence
- MTTTGAQYALAASTGTGHGGGNSNVVEVDAKPNIVVVTTSSTSASGSVAQSQTRGQQLITVVTSTDPSNNNNLQPIQLVVQDSLENAADSSNGSSGTQSHVVVNTTHSGHTIIDSDAATSSTGTIVSESPHYITVTVAGESENVGSESVSHPTYVQYVEGDGSTYNLTNGQMTYPVYTVGETGAMYTPASSQYYTSTNTPVTYAQVSGQATNTTGQLLSQGNGTYLIQQSVVDNDPTTHTLITAAARASPQTDSAEAVVSGGGGAYLISGNAGGATISVEEAATAAANMTHATRVSQATVSHIDSPFVQWLLENYETADGVSLPRSTLYNHYLRHCIDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPNSSLNMLDEDGRRNISNSTNQTKRSKFINPKQEQAYDNNSHNNTNVTSNTTIPQYHQFLGEASIAIPEFPEIIVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCCEVQEFIKTVDYTFYQNLVEVLMPDVLRPIPSTLTQSIRNFAKGLESWLTAAMNDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYTVVQRLEADFKVTLQQQNSLEQWAIWLKSVVTQVLKPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGTTPIAVMGDKNQGCQIISSFGNTSNGDTSNTNQSKRMKMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254817;
- 90% Identity
- iTF_00131033; iTF_00132384;
- 80% Identity
- -