Acha003852.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acromyrmex charruanus
Gene Symbol
Rfx2
Assembly
GCA_017607545.1
Location
JAANIC010003256.1:789446-804705[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-37 7.8e-34 115.2 0.1 2 78 411 487 410 488 0.97

Sequence Information

Coding Sequence
ATGGAAAGGAGCAGCGTGGCGAATTCCAATTTCGTGGTCCCGTCATCCTTCTACTGTGAAAATCTCGAGTTTGCGCTGATGGCGAATGAGTATCAATCAGACATGCCTTGTTACTTCGTTAGAAACCGATCGCTGTTGTATTCGTCTCTCCAGCAGCGGAGAGGTAGTAGCGGTGGTGGCGACGACTCAGTGGGTGCAGAGAGAGACGAAGGAGTGATTGCCATGACTACGACAGGAGCCCAGTATGCCCTCGCAGCAGCATCCACCGGGGCTAATAACAGTGGGGGTAGCTCCACGGCGGTAGGGGTGGATTCTAAGCAAAATGTGGTTGTCGTGACTACTACTTCCAGTTCCAGTGGCGGTGGCAGTGTAGCACAGACTCAGTCTGCCAGAGGCCAAGAACCAGAGTTCATCACTGTCGTGACAAACCCTGACGCTTCCAGTCCAAATAACTTACAACCCATTCAGGATCCACTTGATACAACTGCAGATTCGTCCAACGGCTCAACAGGTACACCAGCGCATGTTACAGCACAGGTAGTAGTCAATACTACTCATTCTGGTCAGCACGCATTAGTGGATTCTGACGCTGCTTCTACATCGGCTGGCACCATTGTCAGTGGTTCCCCGCACTATATAACAGTCACagATTTGGCCCTTTCCATGCTGCTGAAAAACATGCACCTCTGTACTTCTGCTCTGACCATACTAGGCACCAGTGATTCATCACCCTACGCAGCCCTCACAACAGCTGTAGtgtCCGGTGACGCAGAGGCGGTGGGGTCCGAGTCGATCTCTCATCCAACTTACGTTCAATATGTCGAAGGGGATGGCTCCACGTATATACCAGCGAATGGCCAGATGACATATCCTGTTTACGCTGTCGGCGAAACGGGAGCAATGTATACTCCAGCTTCGGGTCAATATTACACTCCAGCAACAACGCCAGTCACGTATGCACAGGTCACAGGACAAGGTACGAATTCGACTACCGGACAACTGTTGTCGCAGGGAAATGGCACGTACTTGATTCAACAGAGCGTAGTAGATGCAGATCCGACCCACACGCTCATATCCGCAGCTGCCACGCGCACCAGCCCGCCAACAGAGACGGCGGAGGCTGTGGTTAGCGGTGGTGGCGGGGCATACTTGATCAGCGGTAATTCTGGAGATATGACTGGCGCCGTGGAAGAGGTAGCGGCAAACGTGACGCATGCTACTAGAGTCTCCCAGGCCACCgTCCATTGGTTATTGGAGAATTACGAAACCGCTGACGGCGTGTCCCTTCCAAGATCAACACTTTACAATCATTATCTACGTCATTGCTCCGAAAACAAATTGGATCCTGTGAATGCAGCTAGTTTTGGCAAATTAATACGTTCTGTATTCTTGGGCTTAAGAACTAGGCGTTTAGGCACTAGgGGAAATTCAAAGTATCATTATTATGGAATTCGTGTTAAGCCAAGTTCACAGCTAACTGTAATGAACGAGGATAGCACATCGAGACAACAGCAGAGCGCAAATTCTCAAGCCAAgcgattcaaatttaatagtCAAAAACAGGACTCTTCTTACGAGAATAACGCACACACAAACACGAATATTTCCGCCAATTCCTCATCGCCACAATATCACCAGTATCTCGGTGAAGCAAGTGGCGCCATTCCCGATTTCCCAGACATCTTTATTAGTCATGACTCGTCCCTGCCCAAGGATTGCACCCTTGAAGACATTGATACGTTCCGCAGCATATACAGAGAACATTGCGAAGCGTTCTTGGATGCAGTGCTGAATTTCGAATTTGCCACGGTAGAGAGCCTTTGGAGAGAATTCTGGCGTAGCCAGGACAATAATAACGGTGATGAATGTGAAGAGGAGAAGTATTTGTCAAAaACCAAACTATATCAGATGTGTCAGTGTACGGGAGTACaagactttataaaaaaagtggaCTATACATTCTATCAGAATCTAGTCGATGTTTTAATGCCTAATGTATTGCGACCGATACCAAGTTCATTGACGCAATCTATCCGAAACTTCGCAAAGGGATTGGAATCTTGGTTACAGTCAGCGATGGCCGATTGTCCTGAAGAAATGACTCAAATTAAGTTAACTGCAGTGTCAGCTTTTGCTCAAACTTTAAGGCGTTATACATCATTAAATCATCTCGCACAGGCCGCGCGAGCGGTGCTTCAAAATTCTAGtcaaattaatcaaatgttAGCTGACCTGAATCGCGTTGATTTTCACAACGTGCAAGAACAAGCATCTTGGGTATGCCAATGTGACTATGGGATGGTACAACGTCTTGAAACGGATTTTAAAGTAACACTACAACAACAAAATTCACTGGAAGATTGGGCGATCTGGTTGAAAGGAGTTGTTACTCAAGCGCTTAAACCACACGAAGAGAAGCCAACATTTGCTAAAGCTGCGCGTCAATTTTTGCTTAAGTGGTCGttttatagCTCAATGGTTATCCGAGATCTCACTTTGAGGAGTGCTGCGAGTTTTGGATCTTTTCATCTTATTAGATTACTTTATGACGAgtacatgttttatttaatagaacaCCAAGTAGCTATCGCAACTGGGACTACGCCAATAGCTGTAATGGGAGATAAAAGTCAAAATTACTCTTTAGTTAATAGCTTTGGGGCAACGTCCAATGGAGATGCGTCTAATACGAGCCAACCAAAACATATAAAGCTAAGC
Protein Sequence
MERSSVANSNFVVPSSFYCENLEFALMANEYQSDMPCYFVRNRSLLYSSLQQRRGSSGGGDDSVGAERDEGVIAMTTTGAQYALAAASTGANNSGGSSTAVGVDSKQNVVVVTTTSSSSGGGSVAQTQSARGQEPEFITVVTNPDASSPNNLQPIQDPLDTTADSSNGSTGTPAHVTAQVVVNTTHSGQHALVDSDAASTSAGTIVSGSPHYITVTDLALSMLLKNMHLCTSALTILGTSDSSPYAALTTAVVSGDAEAVGSESISHPTYVQYVEGDGSTYIPANGQMTYPVYAVGETGAMYTPASGQYYTPATTPVTYAQVTGQGTNSTTGQLLSQGNGTYLIQQSVVDADPTHTLISAAATRTSPPTETAEAVVSGGGGAYLISGNSGDMTGAVEEVAANVTHATRVSQATVHWLLENYETADGVSLPRSTLYNHYLRHCSENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSQLTVMNEDSTSRQQQSANSQAKRFKFNSQKQDSSYENNAHTNTNISANSSSPQYHQYLGEASGAIPDFPDIFISHDSSLPKDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCQCTGVQDFIKKVDYTFYQNLVDVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMADCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYGMVQRLETDFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDKSQNYSLVNSFGATSNGDASNTSQPKHIKLS