Acol004157.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- Rfx2
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000804.1:17345-22352[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-37 5e-33 113.4 0.0 2 78 313 389 312 390 0.97 2 2 0.72 5.9e+03 -2.2 0.1 17 46 527 556 522 567 0.51
Sequence Information
- Coding Sequence
- ATGACTACAACTGGAGCCCAGTATGCTCTTGCAGCATCATCTGGAACTGGTCATGGCGGGGGTAATTCAAATGTTGTAGAGGTGGATCCTAAACCTAATAATATTGTCGTTGTCACAACATCAAGTACCAGTGCCAGTGGTAGTGTTGCACAATCACAGACAAGAGGTCAACAACTTATTACTGTTGTTACAAGTACTGATCcatcaaacaataataatcttCAACCAATACaacTTGTTGTACAGGATTCATTGGAAAACGCTGCTGATTCATCAAATGGTTCATCTGGTACACAGTCACATGTAGTTGTTAATACATCACATTCTGGTCATACAATTATTGATTCAGAcgcagcatcatcatcaactggtACAATTGTCAGTGAATCACCTCACTATATTACAGTTACtgGTACTGGGGATTCACCATCCTACACTTCTCTCACAACGGCAGTAGtggCTGGTGAAGCAGAGAACGTGGGTTCTGAGTCTGTTTCTCATCCTACTTATGTCCAGTATGTCGAAGGGGATGGATCAACTTATAATCTTACAAATGgacaaatgaCATATCCAGTGTATACTGTCGGAGAGACAGGAGCAATGTACACTCCTGCCTCGAGTCAGTATTACACATCAACAAATACACCAGTAACATATGCTcagGTATCGGGACAAGCAACAAACACAACTGGTCAACTTTTATCACAAGGAAATGGAACatatttaatacaacaaagtgttgttgataatgatcCAACAACTCATACTCTTATAACAGCAGCAGCTCGTGCAAGTCCACAAACTGATTCAGCTGAGGCTGTGGTTAGTGGGGGTGGCGGGGCATACTTGATCAGTGGTAATGCCGGAGGTGCTACTATCAGCGTTGAAGAGGCTGCCACAGCAGCAGCAAACATGACGCATGCCACTAGGGTCTCACAGGCCACCgTTCAATGGCTTTTGGAAAACTATGAAACAGCAGATGGTGTATCATTGCCACGTTCAACCCTTTACAATCATTATTTACGTCattgtattgataataaattagatCCAGTTAATGCTGCTAgttttggtaaattaattagatCAGTATTTCTTGGTTTACGAACACGTCGTCTTGGCACAAGAGGTAAttcaaaatatcattattatggaATTCGTGTAAAGCCAAATTCTTCATTAAATATGCTTGATGAAGATGGACGTAGAAGTGtaacaaattcaacaaatcaaacaaaacgatcaaaatttataaatccaaaACAAGAACAAgcttatgaaaataattcccataataatacaaatgtaaCGTCAAACACAACAATACCACAGTATCATCAATTTCTTGGTGAGGCTAGTATTGCTATACCAGAATTTCCAGAAATAATTGTTGGTCATGGATCATCACTTCCTGAAGATTGTACACTTGAAGATATTGATACATTTAGAAGTATTTATCGTGAACATTGTGAGGCATTTTTAGATgctgtattaaattttgaatttgcaACTGTTGAAAGTTTGTGGAGAGAATTTTGGCGTagtcaagataataataatggtgatgaatgtgaagaagaaaaatatttatcaaaaacaaAATTGTATCAAATGTGTAAATGCTGTGAAGTacaagaatttataaaaacagttGATTAcacattttatcaaaatttagtAGAAGTTTTAATGCCAGATGTTCTTCGACCAATACCAagTACATTGACCCAGTCAATTAGAAATTTTGCAAAAGGTCTTGAATCATGGCTGACTGCAGCTATGAATGATTGTCCTGAAGAAATGATGCAAATAAagttgacAGCTGTATCGGCATTTGCTCAAACTCTCAGACGATATACTTCCTTGAATCATCTTGCTCAGGCTGCACGTGCTGTATTACAAAATTCTagtcaaataaatcaaatgttaGCTGATTTAAATCGTGTTGATTTTCACAATGTACAAGAACAGgcCTCCTGGGTATGTCAATGTGATTATACAGTAGTACAACGTTTAGAAGCTGATTTTAAAGTAACATTGCAACAACAAAATTCACTTGAACAATGGGCAATTTGGTTGAAGAGTGTTGTAACACAAGTTTTAAAACCTTATGAGGGTAAACCAACATTTGCCAAAGCTGCTCGTCAATTTTTACTAAAATGGTCTTTCTACAgttcaATGGTTATTCGTGATCTTACATTAAGAAGTGCTGCAAGTTTTGGATCATTTCATCTTATACGATTACTCTATGATGAGtacatgttttatttaattgaacatCAAGTTGCACTTGCCACTGGAACAACTCCAATTGCTGTTATGGGAGat
- Protein Sequence
- MTTTGAQYALAASSGTGHGGGNSNVVEVDPKPNNIVVVTTSSTSASGSVAQSQTRGQQLITVVTSTDPSNNNNLQPIQLVVQDSLENAADSSNGSSGTQSHVVVNTSHSGHTIIDSDAASSSTGTIVSESPHYITVTGTGDSPSYTSLTTAVVAGEAENVGSESVSHPTYVQYVEGDGSTYNLTNGQMTYPVYTVGETGAMYTPASSQYYTSTNTPVTYAQVSGQATNTTGQLLSQGNGTYLIQQSVVDNDPTTHTLITAAARASPQTDSAEAVVSGGGGAYLISGNAGGATISVEEAATAAANMTHATRVSQATVQWLLENYETADGVSLPRSTLYNHYLRHCIDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPNSSLNMLDEDGRRSVTNSTNQTKRSKFINPKQEQAYENNSHNNTNVTSNTTIPQYHQFLGEASIAIPEFPEIIVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCCEVQEFIKTVDYTFYQNLVEVLMPDVLRPIPSTLTQSIRNFAKGLESWLTAAMNDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYTVVQRLEADFKVTLQQQNSLEQWAIWLKSVVTQVLKPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGTTPIAVMGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254817;
- 90% Identity
- iTF_00131700;
- 80% Identity
- -