Labn009301.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptomastidea abnormis
Gene Symbol
Rfx2
Assembly
GCA_030522805.1
Location
JAPYZE010003190.1:19073-24028[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-37 2.5e-33 115.8 0.0 2 78 317 393 316 394 0.97

Sequence Information

Coding Sequence
ATGACTACCACAGGAGCCCAGTACGCTCTTGCAGCATCCACTGGGGCTGGTAATGGCGGGGGCAATTCCACAGTAGGAGTAGATAGCAAGTCAAGCGTCGTTGTTGTTACTACTTCTAATTCCAATGGTAGCGGTAGTGTTGCACAGTCACAGTCTAGCAGAGGCCAACAATTGATAACTGTTGTAACTAGTGATCCATCAAGCCCAAATAATTTGCAACCTatacaaTTATTGGTACAAGATCCTTTAGATGCAACAGGAGATTCATCAAATGGCTCACCAAGTACACAAGCACATGTAACAGCACAAGTTGTAGTTAATACAACACACTCTGGTCAACATACGCTTGTAGACTCAGACGTAGCATCAACATCAGCAGGCACTATTGTCAGTGGCTCACCTCATTACATCACAGTGACAGGCACCAGTGATTCACCATCATACGCATCCCTCACAACAGCTGTAGTACCTGGTGACGCAGACGCCGTGGGTTCCGAGTCAGTTGCCCATCCTACTTATGTTCAATATGTCGAGGGCGATGGATCCACGTATATACCGGCAAATGGACAGATGACATATCCAGTGTATGCTGTTGGAGAAGCGGGAACGATGTATACACCCGCCTCCAATCAGTATTACGCTTCTACTTCCACGCCAGTGACTTATGCTCAAGTCACTGGTTCAAATACAGCAGCAGGACAATTATTATCACAAGGTAATGGAACTTATTTAATCCAACAAAGTGTTGTTGATGGAGATCCAACAACTCATGCTCTCATATCAGCTGCTGCAGCGGCTCGCACAAGTCCGCAAACCGAAAGTGCCGAAGCTGTTGTTAGTGGGGGTGGAGGGGCGTACTTAATCAGCGGCAACTCAACGAATACTCCGGTCAGTGTGGAAGACGCAGCTACTGCCGCGGCTAATATGACGCATGCCACTAGAGTTTCCCAGGCCACCGTGCAATGGTTGTTAGAAAATTACGAAACAGCTGATGGAGTTTCTCTGCCCAGATCGACATTATACAATCATTACCTTCGCCACTGCTCAGATAACAAATTGGATCCTGTGAATGCAGCCAGTTTTGGAAAACTTATTAGATCTGTATTTTTGGGTTTACGAACTCGAAGACTCGGAAcccgcggTAACTCAAAATACCATTATTACGGTATACGAGTGAAGCCGAACTCTCCTTTAGTCATGCTCAACGAGGATGGCACATCACGACAGCAAAACACATCGAATTCACAAGCTAATAAACGAATAAAGTTTGTCAATCAAAAGCAAGAGACGTCTTACGAGTCTAATGCTCAAACGAACAGTACAAATGTCGGTACGAATGCCTCGTCACCGCAGTATCATCAGTACTTGGGTGAAGCAAGCAGTGCCATACCCGAGTTTCCCGAAATTGTCGTCAGCCACAGCTCGTCTTTGCCCGAAGACTGCACTTTGGAAGATATTGATACTTTCCGTAGTATATACAGAGAGCATTTGGAGGCCTTTTTAGATGCAGTgctcaattttgaatttaccaCCGTCGAAAGTCTATGGCGCGAATTTTGGCGCAGTCAAGACAACAACAACGGAGACGAgtgtgaagaagaaaaatatttatccaaaaCAAAACTTTATCAGATATGTAAATGTATGGAAGTTCAAGATTTTATCAGAAGAGTGGattatactttttatcaaaatctcgTAGAAGTATTAATGCCCGATGTATTAAGGCCTATACCAAGTCCGCTAACGCAATCTATAAGAAATTTTGCAAAAGGATTAGAATCATGGTTAACTTCTGCAATGAGTGATTGTCCTGAAGAAATGATGCAGATTAAGTTGACGGCTGTATCAGCTTTTGCACAAACTTTAAGACGATATACCTCGCTAAACCATTTAGCTCAGGCAGCTAGAGCCgtacttcaaaataataatcaaattaatcaaatgTTGGCTGATTTGAATCGAGTAGATTTTCATAATGTACAAGAACagGCTTCGTGGGTTTGTCAATGTGATTATTCAGTGGTACAGCGATTAGAAGCCGATTTTAAAGTGACACTACAGCAACAAAACTCTTTAGAACAATGGGCTGTGTGGTTGAAAGGTGTAGTAACGCAAGTGTTACAGCCTTATGAAGGCAAGCCTACTTTTGCCAAAGCAGCACGACAGTTCCTGCTCAAGTGGTCTTTTTATAGTTCAATGGTCATAAGAGATTTAACTTTAAGAAGTGCCGCTAGTTTCGGATCTTTTCACCTTATTCGTTTACTTTACGATGAATACATGTTTTACTTGATTGAACATCAAGTAGCAATGTCTACAGGTACAACACCAATCGCGGTCATGGGAGAcAAAAGTCAGAGCTGCTCCATGATTAATGTTTTTGGATCAAATGGAGATGCATCAAACATCTGTCCATCAAAGCGAGTAAAATTAAGCTAA
Protein Sequence
MTTTGAQYALAASTGAGNGGGNSTVGVDSKSSVVVVTTSNSNGSGSVAQSQSSRGQQLITVVTSDPSSPNNLQPIQLLVQDPLDATGDSSNGSPSTQAHVTAQVVVNTTHSGQHTLVDSDVASTSAGTIVSGSPHYITVTGTSDSPSYASLTTAVVPGDADAVGSESVAHPTYVQYVEGDGSTYIPANGQMTYPVYAVGEAGTMYTPASNQYYASTSTPVTYAQVTGSNTAAGQLLSQGNGTYLIQQSVVDGDPTTHALISAAAAARTSPQTESAEAVVSGGGGAYLISGNSTNTPVSVEDAATAAANMTHATRVSQATVQWLLENYETADGVSLPRSTLYNHYLRHCSDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPNSPLVMLNEDGTSRQQNTSNSQANKRIKFVNQKQETSYESNAQTNSTNVGTNASSPQYHQYLGEASSAIPEFPEIVVSHSSSLPEDCTLEDIDTFRSIYREHLEAFLDAVLNFEFTTVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQICKCMEVQDFIRRVDYTFYQNLVEVLMPDVLRPIPSPLTQSIRNFAKGLESWLTSAMSDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNNNQINQMLADLNRVDFHNVQEQASWVCQCDYSVVQRLEADFKVTLQQQNSLEQWAVWLKGVVTQVLQPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAMSTGTTPIAVMGDKSQSCSMINVFGSNGDASNICPSKRVKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00254817;
90% Identity
iTF_01523777;
80% Identity
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